Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QWI19_RS02010 Genome accession   NZ_CP129123
Coordinates   374596..375045 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain 6D1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 369596..380045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS01970 - 370050..370238 (+) 189 Protein_344 hypothetical protein -
  QWI19_RS01975 - 370274..370589 (+) 316 Protein_345 RDD family protein -
  QWI19_RS01980 yckD 370671..371003 (+) 333 WP_015252849.1 YckD family protein -
  QWI19_RS01985 - 371131..371553 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  QWI19_RS01990 - 371541..371882 (+) 342 WP_032724911.1 DUF3147 family protein -
  QWI19_RS01995 - 371901..372628 (+) 728 Protein_349 AAA family ATPase -
  QWI19_RS02000 bglC 372701..374134 (+) 1434 WP_015252846.1 6-phospho-beta-glucosidase -
  QWI19_RS02005 nin/comJ 374171..374569 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  QWI19_RS02010 nucA/comI 374596..375045 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  QWI19_RS02015 tlpC 375213..376934 (-) 1722 WP_015252843.1 methyl-accepting chemotaxis protein TlpC -
  QWI19_RS02020 hxlB 377045..377602 (-) 558 WP_015252842.1 6-phospho-3-hexuloisomerase -
  QWI19_RS02025 hxlA 377608..378240 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  QWI19_RS02030 hxlR 378472..378834 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=851173 QWI19_RS02010 WP_003234608.1 374596..375045(-) (nucA/comI) [Bacillus subtilis strain 6D1]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=851173 QWI19_RS02010 WP_003234608.1 374596..375045(-) (nucA/comI) [Bacillus subtilis strain 6D1]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98