Detailed information NTG0851155

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QWG60_RS09330
• Genome accession: NZ_CP129121
• Coordinates: 2019104..2019955 (+)
• Length: 283 a.a.
• NCBI ID: WP_107181786.1
• Uniprot ID: -
• Organism: Halomonas halophila strain CCM 3662
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2014104..2024955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QWG60_RS09305 (QWG60_09305)	-	2014411..2014854 (+)	444	WP_035593526.1	MerR family DNA-binding transcriptional regulator	-
QWG60_RS09310 (QWG60_09310)	-	2014931..2016622 (+)	1692	WP_082090830.1	AMP-binding protein	-
QWG60_RS09315 (QWG60_09315)	-	2016776..2017216 (+)	441	WP_046078537.1	DUF411 domain-containing protein	-
QWG60_RS09320 (QWG60_09320)	-	2017299..2017877 (-)	579	WP_146909745.1	hypoxanthine-guanine phosphoribosyltransferase	-
QWG60_RS09325 (QWG60_09325)	nagZ	2017913..2018926 (-)	1014	WP_046078536.1	beta-N-acetylhexosaminidase	-
QWG60_RS09330 (QWG60_09330)	pilD	2019104..2019955 (+)	852	WP_107181786.1	A24 family peptidase	Machinery gene
QWG60_RS09335 (QWG60_09335)	coaE	2019973..2020602 (+)	630	WP_146909747.1	dephospho-CoA kinase	-
QWG60_RS09340 (QWG60_09340)	yacG	2020646..2020876 (+)	231	WP_035593542.1	DNA gyrase inhibitor YacG	-
QWG60_RS09345 (QWG60_09345)	-	2020881..2021753 (+)	873	WP_146909749.1	DNA replication terminus site-binding protein	-
QWG60_RS09350 (QWG60_09350)	-	2021783..2022082 (-)	300	WP_035593546.1	hypothetical protein	-
QWG60_RS09355 (QWG60_09355)	-	2022394..2023188 (+)	795	WP_146909751.1	helix-turn-helix transcriptional regulator	-
QWG60_RS09360 (QWG60_09360)	-	2023274..2023651 (-)	378	WP_035593549.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30703.94 Da
• Isoelectric Point: 7.5557

>NTDB_id=851155 QWG60_RS09330 WP_107181786.1 2019104..2019955(+) (pilD) [Halomonas halophila strain CCM 3662]
MPVDLPPSLLWPLAAIVGLCLGSFLNVVITRLPVMLMREWRAEAREALELEAEDTSTFNLATPRSMCPRCEAPIAWHDNL
PLIGWLKRRGRCARCGTRISPQYPLVELAGALLTLAVTALFGPTLEGLFVLGACLSLLAMAAIDLRTQLLPDALTLPLLW
AGLLYQLLFQPLQLPSAVIGAMAGYLSLWGFYWLFKLVTGKEGMGYGDFKLFAALGAWLGWVYLPLVLILAAGAGAIVGV
IVQLAVPRLRGAPMPFGPWLAAAGWIALLVGEPLMAHYLTLMM

Nucleotide

• Length: 852 bp

>NTDB_id=851155 QWG60_RS09330 WP_107181786.1 2019104..2019955(+) (pilD) [Halomonas halophila strain CCM 3662]
TTGCCTGTCGATCTTCCCCCTAGCCTGCTGTGGCCGCTGGCCGCGATCGTCGGCCTGTGCCTCGGCAGCTTCCTCAACGT
GGTGATCACTCGCCTGCCGGTGATGCTGATGCGGGAGTGGCGGGCCGAGGCCCGCGAGGCGCTGGAGCTCGAGGCGGAAG
ACACCTCGACCTTCAACCTGGCCACGCCGCGCTCGATGTGCCCACGTTGCGAGGCCCCCATCGCCTGGCACGACAACCTG
CCGCTGATCGGGTGGCTGAAACGCCGCGGGCGCTGCGCTCGCTGCGGCACCCGCATCAGCCCCCAGTATCCACTGGTGGA
GCTGGCCGGCGCCCTGCTGACGCTCGCGGTGACGGCACTGTTCGGCCCCACCCTCGAGGGGCTGTTCGTCCTCGGCGCCT
GCCTGAGCCTGCTGGCGATGGCGGCCATCGACCTGCGCACCCAGCTGCTGCCGGACGCCTTGACCCTGCCGCTGCTGTGG
GCCGGCCTGCTTTACCAGCTGCTGTTCCAGCCGCTGCAGCTGCCGAGCGCGGTGATCGGCGCCATGGCCGGCTATCTCTC
GCTGTGGGGCTTCTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGTTCGCCG
CGCTGGGCGCCTGGCTGGGCTGGGTCTACCTGCCGCTGGTGCTGATCCTGGCCGCCGGGGCCGGCGCCATCGTCGGCGTG
ATCGTCCAGTTGGCCGTGCCGCGCCTGCGCGGCGCCCCCATGCCCTTCGGCCCCTGGCTCGCCGCGGCCGGCTGGATCGC
GCTGCTGGTCGGTGAGCCGCTGATGGCCCACTACCTGACCCTGATGATGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	95.76	0.484
pilD	Vibrio campbellii strain DS40M4	46.57	97.88	0.456
pilD	Acinetobacter nosocomialis M2	47.059	96.113	0.452
pilD	Acinetobacter baumannii D1279779	46.691	96.113	0.449
pilD	Neisseria gonorrhoeae MS11	45.185	95.406	0.431