Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FLY89_RS02835 Genome accession   NZ_AP024415
Coordinates   598280..598690 (+) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NIPH17_0019     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593280..603690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY89_RS02820 (KHAB170019_05450) - 594269..596575 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  FLY89_RS02825 (KHAB170019_05460) - 596620..597393 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  FLY89_RS02830 (KHAB170019_05470) mazG 597505..598311 (+) 807 WP_031958020.1 nucleoside triphosphate pyrophosphohydrolase -
  FLY89_RS02835 (KHAB170019_05480) comEA 598280..598690 (+) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  FLY89_RS02840 (KHAB170019_05490) pcnB 598815..600278 (+) 1464 WP_074162516.1 polynucleotide adenylyltransferase PcnB -
  FLY89_RS02845 (KHAB170019_05500) folK 600275..600757 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FLY89_RS02850 (KHAB170019_05510) panB 600803..601612 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FLY89_RS02855 (KHAB170019_05520) panC 601616..602464 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  FLY89_RS02860 (KHAB170019_05530) rapZ 602487..603338 (+) 852 WP_000821671.1 RNase adapter RapZ -
  FLY89_RS02865 (KHAB170019_05540) - 603335..603604 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=85114 FLY89_RS02835 WP_002036702.1 598280..598690(+) (comEA) [Acinetobacter baumannii strain NIPH17_0019]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=85114 FLY89_RS02835 WP_002036702.1 598280..598690(+) (comEA) [Acinetobacter baumannii strain NIPH17_0019]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375

Multiple sequence alignment