Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QU610_RS04345 Genome accession   NZ_CP129105
Coordinates   917475..917879 (+) Length   134 a.a.
NCBI ID   WP_137296607.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912475..922879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS04310 (QU610_04310) - 912648..913586 (-) 939 WP_137296612.1 tetraacyldisaccharide 4'-kinase -
  QU610_RS04315 (QU610_04315) - 913583..914365 (-) 783 WP_137296611.1 NAD+ synthase -
  QU610_RS04325 (QU610_04325) ilvC 914614..915606 (+) 993 WP_137296610.1 ketol-acid reductoisomerase -
  QU610_RS04330 (QU610_04330) minD 915630..916436 (+) 807 WP_137296609.1 septum site-determining protein MinD -
  QU610_RS04335 (QU610_04335) minE 916433..916666 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  QU610_RS04340 (QU610_04340) dprA 916678..917478 (+) 801 WP_137296608.1 DNA-processing protein DprA Machinery gene
  QU610_RS04345 (QU610_04345) dprB 917475..917879 (+) 405 WP_137296607.1 Holliday junction resolvase RuvX Machinery gene
  QU610_RS04350 (QU610_04350) - 917976..918170 (+) 195 WP_249351080.1 tetratricopeptide repeat protein -
  QU610_RS04355 (QU610_04355) - 918335..918769 (+) 435 WP_290136966.1 hypothetical protein -
  QU610_RS04360 (QU610_04360) - 918772..919176 (+) 405 WP_249351078.1 hypothetical protein -
  QU610_RS04365 (QU610_04365) - 919182..919859 (+) 678 Protein_842 DUF1887 family CARF protein -
  QU610_RS04370 (QU610_04370) - 920195..920315 (+) 121 Protein_843 DNA adenine methylase -
  QU610_RS04375 (QU610_04375) - 920520..921344 (+) 825 WP_137296606.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15268.70 Da        Isoelectric Point: 8.7193

>NTDB_id=850873 QU610_RS04345 WP_137296607.1 917475..917879(+) (dprB) [Helicobacter pylori strain HP45k]
MILACDVGLKRIGIATLLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=850873 QU610_RS04345 WP_137296607.1 917475..917879(+) (dprB) [Helicobacter pylori strain HP45k]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTGTCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955