Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   JUD77_RS03405 Genome accession   NZ_AP024414
Coordinates   678540..679079 (-) Length   179 a.a.
NCBI ID   WP_071162831.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TA8730     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673540..684079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUD77_RS03375 (TA8730_06460) fdx 673946..674287 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  JUD77_RS03380 (TA8730_06470) iscX 674287..674481 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  JUD77_RS03385 (TA8730_06480) - 674529..675143 (-) 615 WP_050838640.1 YfgM family protein -
  JUD77_RS03390 (TA8730_06490) hisS 675161..676432 (-) 1272 WP_071162833.1 histidine--tRNA ligase -
  JUD77_RS03395 (TA8730_06500) ispG 676442..677548 (-) 1107 WP_005654847.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  JUD77_RS03400 (TA8730_06510) - 677557..678468 (-) 912 WP_071162832.1 RodZ family helix-turn-helix domain-containing protein -
  JUD77_RS03405 (TA8730_06520) pilF/pilF2 678540..679079 (-) 540 WP_071162831.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  JUD77_RS03410 (TA8730_06530) - 679180..680331 (-) 1152 WP_042594886.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  JUD77_RS03415 (TA8730_06540) - 680578..681456 (+) 879 WP_005656360.1 D-alanyl-D-alanine carboxypeptidase family protein -
  JUD77_RS03420 (TA8730_06550) - 681821..682702 (+) 882 WP_071162830.1 metal ABC transporter substrate-binding protein -
  JUD77_RS03425 (TA8730_06560) - 682702..683622 (+) 921 WP_040034370.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20623.26 Da        Isoelectric Point: 8.2571

>NTDB_id=85085 JUD77_RS03405 WP_071162831.1 678540..679079(-) (pilF/pilF2) [Haemophilus influenzae strain TA8730]
MKTINTQLSAVIFPFIFSACVSQSASNLNHQAAAKVRVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGQIENAFREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=85085 JUD77_RS03405 WP_071162831.1 678540..679079(-) (pilF/pilF2) [Haemophilus influenzae strain TA8730]
ATGAAAACAATCAATACACAACTAAGTGCGGTTATTTTCCCTTTCATTTTTTCTGCTTGCGTTTCACAATCTGCATCTAA
CTTAAATCATCAAGCTGCCGCTAAAGTGCGTGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGCAAATAGAAAATGCCTTTCGTGAGTATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCCCAGCAACAATTTGAATTAGCACTTAATTCGCCGAATT
ATTATCATCAAGCAGATACATTTGAAAATATTGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

97.207

100

0.972
  pilF Glaesserella parasuis strain SC1401

44.633

98.883

0.441

Multiple sequence alignment