Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | JUD77_RS03045 | Genome accession | NZ_AP024414 |
| Coordinates | 610351..610764 (+) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain TA8730 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 605351..615764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JUD77_RS03025 (TA8730_05780) | - | 605840..608434 (-) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
| JUD77_RS03030 (TA8730_05790) | comA | 608532..609329 (+) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| JUD77_RS03035 (TA8730_05800) | comB | 609330..609836 (+) | 507 | WP_071162873.1 | competence protein ComB | Machinery gene |
| JUD77_RS03040 (TA8730_05810) | comC | 609833..610354 (+) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| JUD77_RS03045 (TA8730_05820) | comD | 610351..610764 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| JUD77_RS03050 (TA8730_05830) | comE | 610774..612135 (+) | 1362 | WP_203620542.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| JUD77_RS03055 (TA8730_05840) | - | 612148..612834 (+) | 687 | WP_071162871.1 | ComF family protein | - |
| JUD77_RS03060 (TA8730_05850) | nfuA | 612910..613506 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| JUD77_RS03065 (TA8730_05860) | nudC | 613574..614368 (+) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
| JUD77_RS03070 (TA8730_05870) | - | 614404..614994 (+) | 591 | WP_071162869.1 | YjaG family protein | - |
| JUD77_RS03075 (TA8730_05880) | - | 615134..615406 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=85082 JUD77_RS03045 WP_005693727.1 610351..610764(+) (comD) [Haemophilus influenzae strain TA8730]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=85082 JUD77_RS03045 WP_005693727.1 610351..610764(+) (comD) [Haemophilus influenzae strain TA8730]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |