Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5G15_RS10550 Genome accession   NZ_CP145090
Coordinates   2014643..2015038 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_A_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009643..2020038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G15_RS10530 (V5G15_10565) rfbC 2009721..2010278 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  V5G15_RS10535 (V5G15_10570) - 2010322..2012340 (-) 2019 WP_047924189.1 OPT family oligopeptide transporter -
  V5G15_RS10540 (V5G15_10575) dnaJ 2012535..2013656 (-) 1122 WP_047949910.1 molecular chaperone DnaJ -
  V5G15_RS10545 (V5G15_10580) - 2013790..2014239 (+) 450 WP_082284936.1 transposase -
  V5G15_RS10550 (V5G15_10585) comE 2014643..2015038 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5G15_RS10555 (V5G15_10590) - 2015140..2015259 (-) 120 Protein_2051 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=850520 V5G15_RS10550 WP_003703428.1 2014643..2015038(-) (comE) [Neisseria gonorrhoeae strain WHO_A_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=850520 V5G15_RS10550 WP_003703428.1 2014643..2015038(-) (comE) [Neisseria gonorrhoeae strain WHO_A_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1