Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LC087_RS07090 Genome accession   NZ_CP129013
Coordinates   1384334..1386031 (-) Length   565 a.a.
NCBI ID   WP_226540139.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379334..1391031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS07070 (LC087_07070) - 1380245..1380487 (+) 243 WP_226540045.1 DUF2627 domain-containing protein -
  LC087_RS07075 (LC087_07075) - 1380522..1381253 (-) 732 WP_226540043.1 glycerophosphodiester phosphodiesterase -
  LC087_RS07080 (LC087_07080) spo0A 1381363..1382142 (-) 780 WP_226540041.1 sporulation transcription factor Spo0A Regulator
  LC087_RS07085 (LC087_07085) spoIVB 1382443..1383726 (-) 1284 WP_226540038.1 SpoIVB peptidase -
  LC087_RS07090 (LC087_07090) recN 1384334..1386031 (-) 1698 WP_226540139.1 DNA repair protein RecN Machinery gene
  LC087_RS07095 (LC087_07095) ahrC 1386075..1386524 (-) 450 WP_226540036.1 transcriptional regulator AhrC/ArgR -
  LC087_RS07100 (LC087_07100) - 1386675..1387511 (-) 837 WP_226540135.1 TlyA family RNA methyltransferase -
  LC087_RS07105 (LC087_07105) dxs 1387505..1389406 (-) 1902 WP_226540034.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LC087_RS07110 (LC087_07110) - 1389428..1390018 (-) 591 WP_226540032.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 64429.47 Da        Isoelectric Point: 4.9728

>NTDB_id=850511 LC087_RS07090 WP_226540139.1 1384334..1386031(-) (recN) [Bacillus carboniphilus strain SaN35-3]
MLAELSIKNFAIIESLTVSFEKGLTVLTGETGAGKSIIIDAIFLLAGGRGSSEFVRHGEQKAELEGLFLLDNEQHQCIDK
CEQFGIEVLDGMIVMQRHISSNGKSVCRINGKLVTISILREVGSHLIDIHGQHDNQVLMNQEKHLSLLDQFCHEEISPAL
IAYQELYEKYASFKKKMLSLSENEQEMVHRLDLIQFQLNEIENAQLQPQEDERLEEELNKLSNFESVYKKLTVSYEALQG
EQRGLDWIGLAMNHLEEVSQISEELKTMYEQMSNSYYLIEELTFQMRNELDQLEFDPKKLDEIQSRLNEISQLKRKYGHT
VEEILSYASVIEEEIDTILNRENHLSKLDDELKSISDDLRVEANNLTVLRKKFADQLRKQIHQELKELYMEKTQFYIEFI
TRKEHFKEYGVDDIAFYLSPNPGESAKPLSKIASGGELSRIMLAMKSIFSIHQEVTSIIFDEVDTGVSGRVAQAIAEKIY
KVSSSSQVICITHLPQVAAMADTHLLISKSIHNNRTTTNVEPLPNQKKVAEIARMLAGAEITNLSKQHAKELLDMAKSIK
YTTLS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=850511 LC087_RS07090 WP_226540139.1 1384334..1386031(-) (recN) [Bacillus carboniphilus strain SaN35-3]
CTGTTAGCAGAATTATCAATTAAAAATTTTGCCATAATCGAAAGCCTTACTGTTTCTTTTGAAAAAGGACTCACGGTTTT
AACAGGAGAAACAGGTGCTGGTAAATCCATTATTATTGATGCAATTTTTTTATTAGCAGGAGGAAGAGGATCTTCTGAGT
TTGTTCGACATGGCGAGCAAAAAGCAGAACTAGAAGGGTTATTTTTATTGGATAATGAACAACATCAATGTATTGATAAA
TGTGAGCAATTTGGGATTGAAGTTTTGGATGGTATGATTGTCATGCAAAGACATATATCATCTAATGGTAAAAGTGTGTG
CCGTATAAATGGTAAATTAGTGACGATTTCTATCTTAAGGGAGGTAGGGAGTCATTTAATTGACATTCATGGTCAACACG
ATAACCAAGTCCTAATGAATCAAGAAAAGCACCTTTCCTTACTTGATCAGTTTTGTCATGAAGAAATTTCACCTGCACTT
ATAGCTTATCAAGAACTGTATGAAAAATACGCTAGCTTTAAGAAGAAAATGTTATCGCTTTCTGAAAATGAACAAGAGAT
GGTTCACCGGTTAGATCTAATCCAATTTCAGCTAAATGAAATTGAAAATGCACAACTACAACCGCAAGAAGATGAACGAT
TAGAAGAAGAATTAAATAAATTATCTAATTTTGAAAGTGTTTATAAAAAACTCACTGTGAGTTATGAAGCACTGCAAGGA
GAACAACGGGGACTTGATTGGATAGGGCTAGCAATGAACCATTTAGAAGAAGTGTCACAAATTAGTGAAGAATTAAAAAC
CATGTATGAACAAATGTCTAATAGTTATTATTTGATTGAGGAATTAACATTCCAAATGAGAAATGAGTTAGATCAACTTG
AATTTGATCCTAAAAAGCTAGATGAAATACAATCTCGATTGAATGAAATATCTCAGTTAAAAAGAAAATATGGACATACC
GTTGAAGAAATTTTATCTTATGCCTCGGTTATTGAAGAGGAAATTGACACGATTTTAAACCGTGAAAATCATTTGTCCAA
ACTGGATGATGAACTTAAATCGATATCCGATGATTTACGTGTAGAAGCAAACAATTTAACAGTACTTCGAAAAAAGTTTG
CAGACCAGTTAAGAAAGCAAATTCATCAAGAGTTAAAAGAGCTTTACATGGAAAAAACCCAATTTTATATCGAATTTATA
ACTCGAAAAGAACATTTTAAAGAGTACGGGGTAGATGATATAGCGTTTTATTTATCTCCAAATCCGGGTGAATCAGCGAA
ACCTCTCTCTAAAATCGCTTCTGGAGGAGAATTATCGAGAATTATGTTAGCAATGAAAAGTATTTTCTCGATTCATCAAG
AGGTTACCTCGATAATATTTGATGAAGTAGACACAGGTGTAAGTGGGAGAGTGGCTCAAGCAATTGCGGAAAAAATTTAC
AAAGTTTCTTCCAGTTCGCAAGTCATTTGTATTACTCATTTGCCCCAAGTTGCAGCAATGGCAGACACTCATTTGTTAAT
CTCTAAATCCATTCATAATAATCGAACAACAACGAACGTTGAACCCTTACCAAATCAGAAAAAAGTAGCAGAAATTGCTC
GAATGCTAGCAGGTGCTGAAATTACCAATCTTTCTAAACAACATGCAAAAGAATTGCTTGATATGGCAAAATCAATAAAA
TACACGACTTTATCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.368

100

0.646