Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LC087_RS07080 Genome accession   NZ_CP129013
Coordinates   1381363..1382142 (-) Length   259 a.a.
NCBI ID   WP_226540041.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376363..1387142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS07060 (LC087_07060) yqiS 1376616..1377536 (-) 921 WP_226540141.1 phosphate butyryltransferase -
  LC087_RS07065 (LC087_07065) - 1377716..1379803 (-) 2088 WP_226540047.1 sigma-54-dependent Fis family transcriptional regulator -
  LC087_RS07070 (LC087_07070) - 1380245..1380487 (+) 243 WP_226540045.1 DUF2627 domain-containing protein -
  LC087_RS07075 (LC087_07075) - 1380522..1381253 (-) 732 WP_226540043.1 glycerophosphodiester phosphodiesterase -
  LC087_RS07080 (LC087_07080) spo0A 1381363..1382142 (-) 780 WP_226540041.1 sporulation transcription factor Spo0A Regulator
  LC087_RS07085 (LC087_07085) spoIVB 1382443..1383726 (-) 1284 WP_226540038.1 SpoIVB peptidase -
  LC087_RS07090 (LC087_07090) recN 1384334..1386031 (-) 1698 WP_226540139.1 DNA repair protein RecN Machinery gene
  LC087_RS07095 (LC087_07095) ahrC 1386075..1386524 (-) 450 WP_226540036.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29063.75 Da        Isoelectric Point: 6.3924

>NTDB_id=850510 LC087_RS07080 WP_226540041.1 1381363..1382142(-) (spo0A) [Bacillus carboniphilus strain SaN35-3]
MKKIKVCLVDDNRELVHLLEEYVSNQEDMEIVGVAYNGQDCLTILEEKKPDVLVLDIIMPHIDGLAVLEKMKDLKQESQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVSHIREVAGSPSPIIKRSTGERMENKPKNLDASITSIIHEIGVPA
HIKGYMYLREAISMVYKDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMSKAKPT
NSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 780 bp        

>NTDB_id=850510 LC087_RS07080 WP_226540041.1 1381363..1382142(-) (spo0A) [Bacillus carboniphilus strain SaN35-3]
GTGAAGAAAATCAAAGTATGTTTAGTTGATGATAACAGGGAGCTTGTGCACCTACTCGAAGAATACGTGTCAAATCAAGA
GGATATGGAAATAGTTGGAGTTGCTTATAATGGCCAAGATTGTTTAACGATCTTAGAAGAAAAAAAGCCAGATGTACTCG
TTTTGGATATTATAATGCCCCATATAGATGGTTTGGCCGTATTAGAAAAAATGAAGGATTTGAAACAGGAAAGTCAGCCG
AATGTCATTATGTTGACAGCATTTGGACAGGAAGATGTAACAAAAAAAGCTGTCGATTTAGGGGCTTCTTATTTTATCTT
AAAACCCTTTGATATGGAGAATTTAGTTAGTCATATTAGAGAAGTTGCAGGAAGTCCTTCACCTATTATTAAAAGATCCA
CAGGTGAAAGAATGGAAAATAAGCCAAAAAATTTGGATGCGAGTATTACAAGTATTATTCATGAAATAGGAGTACCAGCT
CATATTAAAGGGTATATGTATTTACGAGAAGCCATTTCTATGGTTTATAAGGATATTGAATTACTTGGATCTATTACCAA
GGTATTATACCCAGATATTGCTAAAAAGTATAATACAACGGCTTCTAGAGTTGAACGAGCGATTCGCCATGCGATTGAAG
TCGCCTGGAGCAGGGGAAATATTGACTCCATTTCTTCTTTATTTGGATATACTGTAAGTATGTCGAAGGCTAAGCCGACA
AATAGTGAATTTATTGCCATGGTTGCAGATAAATTGCGCTTAGAACATAAAGCTTCCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(149-252)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

79.401

100

0.819