Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   QWH96_RS00300 Genome accession   NZ_CP128987
Coordinates   51874..51972 (+) Length   32 a.a.
NCBI ID   WP_198763767.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 46874..56972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS00280 (QWH96_00280) - 47934..49190 (+) 1257 WP_003055555.1 DUF4041 domain-containing protein -
  QWH96_RS00285 (QWH96_00285) - 49183..49392 (+) 210 WP_014611912.1 hypothetical protein -
  QWH96_RS00290 (QWH96_00290) purB 49441..50733 (+) 1293 WP_049519794.1 adenylosuccinate lyase -
  QWH96_RS00295 (QWH96_00295) comR 50876..51787 (+) 912 WP_003060893.1 XRE family transcriptional regulator Regulator
  QWH96_RS00300 (QWH96_00300) comS 51874..51972 (+) 99 WP_198763767.1 quorum-sensing system DWW-type pheromone Regulator
  QWH96_RS00305 (QWH96_00305) ruvB 52006..53004 (+) 999 WP_015057190.1 Holliday junction branch migration DNA helicase RuvB -
  QWH96_RS00310 (QWH96_00310) - 53139..53570 (+) 432 WP_048327929.1 low molecular weight protein-tyrosine-phosphatase -
  QWH96_RS00315 (QWH96_00315) - 53599..54000 (+) 402 WP_003049089.1 MORN repeat-containing protein -
  QWH96_RS00320 (QWH96_00320) - 53997..55772 (+) 1776 WP_003059359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3718.54 Da        Isoelectric Point: 9.1703

>NTDB_id=850153 QWH96_RS00300 WP_198763767.1 51874..51972(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MFKKIKPYLLLAAVVAFKVACAMNEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=850153 QWH96_RS00300 WP_198763767.1 51874..51972(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGTTTAAAAAAATCAAACCATATTTGTTATTAGCCGCAGTCGTTGCTTTCAAAGTTGCTTGTGCAATGAACGAATTTGA
TTGGTGGAACCTAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

81.25

100

0.813
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437