Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5F94_RS09855 Genome accession   NZ_CP145074
Coordinates   1891941..1892336 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_I_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886941..1897336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F94_RS09835 (V5F94_09875) rfbC 1887018..1887575 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  V5F94_RS09840 (V5F94_09880) - 1887619..1889637 (-) 2019 WP_010360937.1 OPT family oligopeptide transporter -
  V5F94_RS09845 (V5F94_09885) dnaJ 1889832..1890953 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  V5F94_RS09850 (V5F94_09890) - 1891087..1891536 (+) 450 WP_012504156.1 transposase -
  V5F94_RS09855 (V5F94_09895) comE 1891941..1892336 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5F94_RS09860 (V5F94_09900) - 1892438..1892557 (-) 120 Protein_1912 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=850096 V5F94_RS09855 WP_003703428.1 1891941..1892336(-) (comE) [Neisseria gonorrhoeae strain WHO_I_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=850096 V5F94_RS09855 WP_003703428.1 1891941..1892336(-) (comE) [Neisseria gonorrhoeae strain WHO_I_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1