Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G04_RS09080 Genome accession   NZ_CP145067
Coordinates   1735258..1735659 (+) Length   133 a.a.
NCBI ID   WP_269472848.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1730258..1740659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS09045 (V5G04_09060) - 1730875..1731273 (+) 399 Protein_1758 pilin -
  V5G04_RS09050 (V5G04_09070) lpxC 1731775..1732698 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G04_RS09055 (V5G04_09075) pilE 1732804..1733229 (+) 426 WP_134472171.1 pilin Machinery gene
  V5G04_RS09060 (V5G04_09080) - 1733352..1733470 (+) 119 Protein_1761 pilin -
  V5G04_RS09065 (V5G04_09085) - 1734035..1734412 (+) 378 Protein_1762 pilin -
  V5G04_RS09070 (V5G04_09090) - 1734473..1734778 (+) 306 Protein_1763 pilin -
  V5G04_RS09075 (V5G04_09095) - 1734797..1735126 (+) 330 Protein_1764 pilin -
  V5G04_RS09080 (V5G04_09100) pilE 1735258..1735659 (+) 402 WP_269472848.1 pilin Machinery gene
  V5G04_RS09085 (V5G04_09105) - 1735794..1736177 (+) 384 Protein_1766 pilin -
  V5G04_RS09090 (V5G04_09110) - 1736610..1737371 (+) 762 Protein_1767 opacity family porin -
  V5G04_RS09095 (V5G04_09115) pilA 1737640..1738893 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G04_RS09100 (V5G04_09120) msrAB 1739039..1740607 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14557.26 Da        Isoelectric Point: 9.6742

>NTDB_id=849953 V5G04_RS09080 WP_269472848.1 1735258..1735659(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
MNPSGVNKEIQDKRLSLWAKRENGSVKWFCGQPVKRDNANAAKDDVTATMNSSNVNKEIQGKKLSLWARRQDGSVKWFCG
QPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 402 bp        

>NTDB_id=849953 V5G04_RS09080 WP_269472848.1 1735258..1735659(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
ATGAATCCAAGCGGCGTAAACAAAGAAATCCAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGCCAAAGACGACGTCACCGCCACAATGAATTCAAGCA
ACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGA
CAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACACCAA
GCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCT
AA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(40-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.676

55.639

0.421
  pilE Neisseria gonorrhoeae strain FA1090

71.795

58.647

0.421