Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G04_RS09035 Genome accession   NZ_CP145067
Coordinates   1729491..1729892 (+) Length   133 a.a.
NCBI ID   WP_269472848.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1724491..1734892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS08995 (V5G04_09010) - 1724959..1725579 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5G04_RS09000 (V5G04_09015) - 1725778..1726154 (-) 377 Protein_1749 transposase -
  V5G04_RS09005 (V5G04_09020) - 1726463..1726588 (-) 126 Protein_1750 IS110 family transposase -
  V5G04_RS09010 (V5G04_09025) - 1727146..1727580 (+) 435 Protein_1751 pilin -
  V5G04_RS09015 (V5G04_09030) - 1727714..1728091 (+) 378 Protein_1752 pilin -
  V5G04_RS09020 (V5G04_09035) - 1728253..1728645 (+) 393 Protein_1753 pilin -
  V5G04_RS09025 (V5G04_09040) - 1728706..1729011 (+) 306 Protein_1754 pilin -
  V5G04_RS09030 (V5G04_09045) - 1729030..1729359 (+) 330 Protein_1755 pilin -
  V5G04_RS09035 (V5G04_09050) pilE 1729491..1729892 (+) 402 WP_269472848.1 pilin Machinery gene
  V5G04_RS09040 (V5G04_09055) - 1730027..1730410 (+) 384 Protein_1757 pilin -
  V5G04_RS09045 (V5G04_09060) - 1730875..1731273 (+) 399 Protein_1758 pilin -
  V5G04_RS09050 (V5G04_09070) lpxC 1731775..1732698 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G04_RS09055 (V5G04_09075) pilE 1732804..1733229 (+) 426 WP_134472171.1 pilin Machinery gene
  V5G04_RS09060 (V5G04_09080) - 1733352..1733470 (+) 119 Protein_1761 pilin -
  V5G04_RS09065 (V5G04_09085) - 1734035..1734412 (+) 378 Protein_1762 pilin -
  V5G04_RS09070 (V5G04_09090) - 1734473..1734778 (+) 306 Protein_1763 pilin -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14557.26 Da        Isoelectric Point: 9.6742

>NTDB_id=849951 V5G04_RS09035 WP_269472848.1 1729491..1729892(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
MNPSGVNKEIQDKRLSLWAKRENGSVKWFCGQPVKRDNANAAKDDVTATMNSSNVNKEIQGKKLSLWARRQDGSVKWFCG
QPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 402 bp        

>NTDB_id=849951 V5G04_RS09035 WP_269472848.1 1729491..1729892(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
ATGAATCCAAGCGGCGTAAACAAAGAAATCCAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGCCAAAGACGACGTCACCGCCACAATGAATTCAAGCA
ACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGA
CAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACACCAA
GCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCT
AA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(40-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.676

55.639

0.421
  pilE Neisseria gonorrhoeae strain FA1090

71.795

58.647

0.421