Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5F91_RS10025 Genome accession   NZ_CP145064
Coordinates   1928248..1928643 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1923248..1933643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS10005 (V5F91_10040) rfbC 1923325..1923882 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  V5F91_RS10010 (V5F91_10045) - 1923926..1925944 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  V5F91_RS10015 (V5F91_10050) dnaJ 1926139..1927260 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  V5F91_RS10020 (V5F91_10055) - 1927394..1927843 (+) 450 WP_017146914.1 transposase -
  V5F91_RS10025 (V5F91_10060) comE 1928248..1928643 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5F91_RS10030 (V5F91_10065) - 1928745..1928864 (-) 120 Protein_1945 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=849883 V5F91_RS10025 WP_003703428.1 1928248..1928643(-) (comE) [Neisseria gonorrhoeae strain WHO_S_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=849883 V5F91_RS10025 WP_003703428.1 1928248..1928643(-) (comE) [Neisseria gonorrhoeae strain WHO_S_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1