Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   V5F91_RS03890 Genome accession   NZ_CP145064
Coordinates   762625..764370 (+) Length   581 a.a.
NCBI ID   WP_196961867.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757625..769370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS03865 (V5F91_03880) - 757841..759379 (+) 1539 WP_050305215.1 SurA N-terminal domain-containing protein -
  V5F91_RS03870 (V5F91_03885) recR 759446..760063 (+) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  V5F91_RS03875 (V5F91_03890) - 760119..760397 (-) 279 WP_003688659.1 hypothetical protein -
  V5F91_RS03880 (V5F91_03895) - 760623..761870 (+) 1248 WP_003691197.1 lipoprotein-releasing ABC transporter permease subunit -
  V5F91_RS03885 (V5F91_03900) lolD 761863..762558 (+) 696 WP_003688655.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  V5F91_RS03890 (V5F91_03905) recD 762625..764370 (+) 1746 WP_196961867.1 exodeoxyribonuclease V subunit alpha Machinery gene
  V5F91_RS03895 (V5F91_03910) - 764442..765088 (-) 647 Protein_765 methyltransferase -
  V5F91_RS03900 (V5F91_03915) - 765096..766058 (+) 963 WP_353174498.1 IS110-like element ISNgo2 family transposase -
  V5F91_RS03905 (V5F91_03920) - 766191..766646 (-) 456 Protein_767 methyltransferase -
  V5F91_RS03910 (V5F91_03925) lon 766898..769360 (+) 2463 WP_353174450.1 endopeptidase La -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63042.83 Da        Isoelectric Point: 6.0083

>NTDB_id=849858 V5F91_RS03890 WP_196961867.1 762625..764370(+) (recD) [Neisseria gonorrhoeae strain WHO_S_2024]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRTHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
STVKVRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=849858 V5F91_RS03890 WP_196961867.1 762625..764370(+) (recD) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGACGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AGCACCGTCAAAGTCCGTCAGACAGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

99.656

100

0.997
  recD Neisseria gonorrhoeae strain FA1090

99.484

100

0.995