Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G16_RS11075 Genome accession   NZ_CP145062
Coordinates   2112181..2112615 (-) Length   144 a.a.
NCBI ID   WP_010356020.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_T_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107181..2117615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G16_RS11045 (V5G16_11070) - 2108329..2108685 (-) 357 Protein_2137 pilin -
  V5G16_RS11050 (V5G16_11075) - 2109067..2109465 (-) 399 Protein_2138 pilin -
  V5G16_RS11055 (V5G16_11080) - 2109627..2109980 (-) 354 Protein_2139 pilin -
  V5G16_RS11060 (V5G16_11085) - 2110020..2110412 (-) 393 Protein_2140 pilin -
  V5G16_RS11065 (V5G16_11090) - 2110794..2111243 (-) 450 Protein_2141 pilin -
  V5G16_RS11070 (V5G16_11095) - 2111772..2112128 (-) 357 Protein_2142 pilin -
  V5G16_RS11075 (V5G16_11100) pilE 2112181..2112615 (-) 435 WP_010356020.1 pilin Machinery gene
  V5G16_RS11080 (V5G16_11105) - 2112667..2112975 (+) 309 Protein_2144 NAD(P)-dependent oxidoreductase -
  V5G16_RS11085 (V5G16_11110) metG 2113050..2115104 (-) 2055 WP_050155740.1 methionine--tRNA ligase -
  V5G16_RS11090 (V5G16_11115) glmS 2115220..2117058 (-) 1839 WP_047919413.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.35 Da        Isoelectric Point: 8.0249

>NTDB_id=849818 V5G16_RS11075 WP_010356020.1 2112181..2112615(-) (pilE) [Neisseria gonorrhoeae strain WHO_T_2024]
MASASEIKGKYVESVTVEKGVVTAKMLSSGVNNEIKNKKLSLWAKREAGSVKWFCGQPVTRDNANAANDDTVTADTDTNG
KIDTKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=849818 V5G16_RS11075 WP_010356020.1 2112181..2112615(-) (pilE) [Neisseria gonorrhoeae strain WHO_T_2024]
GTGGCATCCGCTTCAGAAATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGAAAAAGGCGTCGTTACCGCCAAAATGCT
TTCAAGCGGCGTAAACAATGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAACGCCAACGCCGCCAACGACGACACCGTCACCGCCGACACCGACACCAACGGC
AAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGT
TACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGC
CGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.652

63.889

0.451
  pilE Neisseria gonorrhoeae MS11

71.591

61.111

0.438