Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   V5F98_RS02105 Genome accession   NZ_CP145052
Coordinates   404567..406858 (-) Length   763 a.a.
NCBI ID   WP_047924373.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_F_2024     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 399567..411858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F98_RS02090 (V5F98_02090) - 400000..400602 (+) 603 WP_017147124.1 restriction endonuclease subunit S -
  V5F98_RS02095 (V5F98_02095) - 400628..401197 (+) 570 WP_225577397.1 restriction endonuclease subunit S -
  V5F98_RS02100 (V5F98_02100) - 401429..404527 (+) 3099 Protein_411 type I restriction endonuclease subunit R -
  V5F98_RS02105 (V5F98_02105) clpC 404567..406858 (-) 2292 WP_047924373.1 ATP-dependent Clp protease ATP-binding subunit ClpA Regulator
  V5F98_RS02110 (V5F98_02110) clpS 406860..407162 (-) 303 WP_010951037.1 ATP-dependent Clp protease adapter ClpS -
  V5F98_RS02115 (V5F98_02115) - 407407..407610 (+) 204 WP_002217533.1 cold-shock protein -
  V5F98_RS02120 (V5F98_02120) pmbA 407909..409240 (-) 1332 WP_003687847.1 metalloprotease PmbA -
  V5F98_RS02125 (V5F98_02125) yjgA 409394..409900 (+) 507 WP_010357415.1 ribosome biogenesis factor YjgA -
  V5F98_RS02130 (V5F98_02130) - 409947..410678 (+) 732 WP_003696856.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 84328.28 Da        Isoelectric Point: 6.7908

>NTDB_id=849470 V5F98_RS02105 WP_047924373.1 404567..406858(-) (clpC) [Neisseria gonorrhoeae strain WHO_F_2024]
MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDAAVPNVLKLCGADLKAVSEQLAASVAENTPLIPDHLLDTVET
RPTLGFQRVIQRAMVHTQSAGKGLAEPLDVLVALMSETDSHAVYFLKLQSVTRFEVLRCIAHGSPDEDEDDGNYFSDGMD
DDNENRTKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPLLVGEAGVGKTALADGLAHQIVNDD
IPDALKEAEVYALDMGSLLAGTKYRGDFEARVKSVLKQLEKIPHAILFIDEIHTIIGAGSTGGGTMDASNLLKPALAKGS
LRCIGATTYDEYRTIFDKDHALSRRFQKIDVVEPTVAETVQILRGLKPMFEAFHQVRYTQGALEAAAELSARYINERFLP
DKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVARIPEKTVSHDDKQVLQFLGRDLKNMVYGQENAIDALVAAVK
MSRSGLALPDKPIGSFLFSGPTGVGKTEAAKQLAYSMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNK
QPHCVLLLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSLGFTAKRERGDEMQAINKL
FTPEFRNRLDAIIPFAPLSEPIIVKVVDKFLLQLEHRLLDKKVEAEFTPALRKYLAEKGFDPQMGARPMHRLIQEKIRKP
LADELLFGKLADGGFVRIDWDAAKEEAVLKFKKSKVKIKTASA

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=849470 V5F98_RS02105 WP_047924373.1 404567..406858(-) (clpC) [Neisseria gonorrhoeae strain WHO_F_2024]
ATGCTTGCCCCTGAATTGGAACAGATTTTGCAGCAGCTTTACCGCGAGGCGCGTAAGGCTCATTATGAATTTATCAGCCT
CGAGCATCTGCTTTTGGTACTCATCGAAGAAGATGCCGCCGTGCCGAACGTCTTAAAACTCTGCGGTGCGGATTTAAAAG
CGGTGTCCGAACAACTCGCCGCCAGCGTTGCCGAAAACACCCCCCTGATTCCCGACCACCTTTTAGACACGGTCGAAACC
CGGCCCACGCTCGGCTTCCAACGCGTCATCCAGCGGGCGATGGTGCATACCCAATCGGCAGGCAAAGGCTTGGCCGAGCC
TTTGGACGTTTTGGTCGCGCTGATGAGCGAAACCGACAGCCACGCCGTCTATTTCCTCAAGCTGCAATCGGTTACGCGTT
TTGAAGTTTTGCGCTGTATTGCCCACGGCTCTCCCGATGAAGATGAAGACGATGGCAACTATTTTTCAGACGGCATGGAC
GACGATAATGAGAACCGCACCAAACCGGGCAAAAACCCTTTATCGGCGTACACCGTCAACCTCAACGCCGAAGTCAAAGC
CGGCCGTATCGATCCTTTGATTGGTCGCAAACACGAAATGGAACGGCTGGTGCAAATCCTGTGCCGCCGCCGCAAAAACA
ATCCGCTTTTGGTCGGCGAAGCAGGCGTGGGCAAAACCGCGCTGGCGGACGGTTTGGCACATCAAATCGTCAACGACGAC
ATTCCCGACGCGCTCAAAGAGGCCGAAGTGTACGCGCTGGATATGGGTTCGCTTTTGGCGGGCACAAAATACCGCGGCGA
CTTTGAAGCGCGGGTCAAATCCGTCTTGAAACAGCTCGAAAAAATCCCGCACGCCATTTTATTCATCGACGAAATCCACA
CCATCATCGGCGCGGGCAGCACCGGCGGCGGCACGATGGACGCGTCCAACCTGCTCAAACCCGCATTGGCGAAAGGTTCA
TTGCGCTGTATCGGCGCAACCACTTACGACGAATACCGTACTATTTTTGACAAAGACCACGCCCTAAGCCGCCGCTTCCA
GAAAATCGACGTGGTCGAACCCACCGTTGCCGAAACCGTTCAAATCCTGCGCGGCTTGAAACCGATGTTCGAAGCCTTCC
ACCAAGTCCGCTACACGCAAGGCGCACTCGAAGCCGCCGCCGAACTCTCCGCCCGCTACATCAACGAGCGCTTCCTGCCC
GACAAAGCCATCGACGTAATGGACGAAGCAGGCGCGGCGCAACGGATTCTGCCCAAATCCAAACAGAAAAAAGTCATCGG
CAAAGCGCAAATCGAAACCGTCATCGCCAAAGTCGCGCGGATTCCCGAAAAGACCGTGTCGCACGACGACAAACAAGTGT
TGCAATTCCTCGGCCGCGATTTGAAAAACATGGTTTACGGTCAGGAAAATGCCATCGATGCGTTGGTTGCCGCCGTCAAA
ATGTCGCGCTCCGGCCTTGCCCTGCCCGACAAACCGATAGGCAGCTTCCTCTTCTCCGGCCCTACCGGCGTCGGCAAAAC
CGAAGCCGCCAAACAGCTTGCCTACTCAATGGGCGTACCGCTGCAACGCTTTGATATGTCCGAATACATGGAACGCCACG
CCGTATCGCGACTCATCGGCGCGCCACCGGGCTACGTCGGCTTTGAACAAGGCGGCCTTTTGACCGAAGCCGTCAACAAG
CAGCCTCATTGCGTGTTGCTCTTGGACGAAATCGAAAAAGCCCATCCAGATATTTTCAACGTCCTCCTGCAAGTCATGGA
CGCAGGCAAACTGACCGATAACAACGGTAAGAGCGCCGATTTCCGCAACGTCATCCTGATCATGACCACCAACGCAGGCG
CAGAAAGCCTCAGCCGACCCAGCCTAGGCTTTACCGCCAAACGCGAGCGCGGCGACGAAATGCAGGCAATCAACAAACTC
TTCACGCCCGAGTTCCGCAACCGCTTGGACGCGATCATCCCGTTTGCACCTTTGTCCGAACCCATCATCGTCAAAGTCGT
GGACAAATTCCTGCTCCAGCTCGAACACCGGCTCCTCGACAAAAAAGTCGAAGCCGAATTCACACCGGCATTGCGTAAAT
ACTTGGCAGAAAAAGGTTTCGACCCGCAAATGGGCGCGCGCCCGATGCACCGCCTGATTCAGGAAAAAATCCGCAAACCG
CTCGCCGACGAACTCCTGTTCGGCAAACTCGCCGACGGCGGCTTTGTGCGGATAGACTGGGATGCGGCGAAAGAAGAAGC
CGTATTGAAGTTTAAGAAAAGCAAGGTCAAAATAAAAACCGCCTCCGCATAA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(356-453)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-61)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(658-738)

AAA domain (Cdc48 subfamily) (AAA_2)

(491-652)

ATPase family associated with various cellular activities (AAA) (AAA)

(216-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.002

100

0.409
  clpC Streptococcus mutans UA159

38.184

100

0.402
  clpC Bacillus subtilis subsp. subtilis str. 168

37.221

100

0.393
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.586

94.233

0.392