Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QU518_RS22625 Genome accession   NZ_CP128635
Coordinates   4701654..4703174 (+) Length   506 a.a.
NCBI ID   WP_069598885.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain WL111     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4696654..4708174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU518_RS22600 (QU518_22570) ilvE 4698221..4699150 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  QU518_RS22605 (QU518_22575) ilvM 4699169..4699432 (-) 264 WP_248211975.1 acetolactate synthase 2 small subunit -
  QU518_RS22610 (QU518_22580) ilvG 4699429..4701075 (-) 1647 WP_069598884.1 acetolactate synthase 2 catalytic subunit -
  QU518_RS22615 (QU518_22585) ilvX 4701078..4701128 (-) 51 WP_166792073.1 peptide IlvX -
  QU518_RS22620 (QU518_22590) ilvL 4701215..4701313 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QU518_RS22625 (QU518_22595) comM 4701654..4703174 (+) 1521 WP_069598885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QU518_RS22630 (QU518_22600) - 4703205..4703543 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  QU518_RS22635 (QU518_22605) hdfR 4703662..4704483 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54869.80 Da        Isoelectric Point: 7.1226

>NTDB_id=849437 QU518_RS22625 WP_069598885.1 4701654..4703174(+) (comM) [Enterobacter roggenkampii strain WL111]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAVADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=849437 QU518_RS22625 WP_069598885.1 4701654..4703174(+) (comM) [Enterobacter roggenkampii strain WL111]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTCATCGCCGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTGTAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGCGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCGGCATCGTTACAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCTCTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATCTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAATTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGAGCGGGTGATCGCTGCCCAGGCACGACAATACACCCGCCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAATAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTATCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441