Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5G13_RS02690 Genome accession   NZ_CP145041
Coordinates   522112..522585 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   B4RKG7
Organism   Neisseria gonorrhoeae strain WHO_M_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517112..527585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G13_RS02665 (V5G13_02670) dnaB 517566..518972 (+) 1407 WP_010359914.1 replicative DNA helicase -
  V5G13_RS02670 (V5G13_02675) pilH 519280..519942 (+) 663 WP_106176301.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G13_RS02675 (V5G13_02680) pilV/pilI 519974..520591 (+) 618 WP_106176300.1 type IV pilus modification protein PilV Regulator
  V5G13_RS02680 (V5G13_02685) pilJ 520588..521520 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  V5G13_RS02685 (V5G13_02690) pilK 521499..522110 (+) 612 WP_106176299.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G13_RS02690 (V5G13_02695) pilL 522112..522585 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G13_RS02695 (V5G13_02700) - 522655..522963 (-) 309 WP_025456241.1 AzlD family protein -
  V5G13_RS02700 (V5G13_02705) - 522960..523671 (-) 712 Protein_522 AzlC family ABC transporter permease -
  V5G13_RS02705 (V5G13_02710) dut 523837..524289 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G13_RS02710 (V5G13_02715) dapC 524361..525548 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G13_RS02715 (V5G13_02720) yaaA 525704..526483 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=849188 V5G13_RS02690 WP_012503482.1 522112..522585(+) (pilL) [Neisseria gonorrhoeae strain WHO_M_2024]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=849188 V5G13_RS02690 WP_012503482.1 522112..522585(+) (pilL) [Neisseria gonorrhoeae strain WHO_M_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854