Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5G08_RS06505 Genome accession   NZ_CP145037
Coordinates   1247823..1248218 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_O_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242823..1253218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G08_RS06465 (V5G08_06490) - 1243092..1243364 (-) 273 WP_003691603.1 ACT domain-containing protein -
  V5G08_RS06470 (V5G08_06495) - 1243489..1244226 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  V5G08_RS06475 (V5G08_06500) prmB 1244364..1245263 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  V5G08_RS06480 (V5G08_06505) - 1245407..1245814 (+) 408 WP_025455901.1 hypothetical protein -
  V5G08_RS06485 (V5G08_06510) - 1245748..1246053 (+) 306 WP_195764396.1 hypothetical protein -
  V5G08_RS06490 (V5G08_06515) - 1246220..1246872 (+) 653 Protein_1265 IS1595 family transposase -
  V5G08_RS06495 (V5G08_06520) - 1247146..1247472 (+) 327 Protein_1266 hypothetical protein -
  V5G08_RS06500 (V5G08_06525) - 1247742..1247889 (+) 148 Protein_1267 peptidase -
  V5G08_RS06505 (V5G08_06530) comE 1247823..1248218 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5G08_RS06510 (V5G08_06535) - 1248320..1248439 (-) 120 Protein_1269 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=849136 V5G08_RS06505 WP_003703428.1 1247823..1248218(-) (comE) [Neisseria gonorrhoeae strain WHO_O_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=849136 V5G08_RS06505 WP_003703428.1 1247823..1248218(-) (comE) [Neisseria gonorrhoeae strain WHO_O_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1