Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5F93_RS06285 Genome accession   NZ_CP145035
Coordinates   1200643..1201038 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_P_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1195643..1206038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F93_RS06245 (V5F93_06250) - 1195911..1196183 (-) 273 WP_003691603.1 ACT domain-containing protein -
  V5F93_RS06250 (V5F93_06255) - 1196308..1197045 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  V5F93_RS06255 (V5F93_06260) prmB 1197183..1198082 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  V5F93_RS06260 (V5F93_06265) - 1198226..1198633 (+) 408 WP_010358807.1 hypothetical protein -
  V5F93_RS06265 (V5F93_06270) - 1198567..1198899 (+) 333 WP_196375186.1 hypothetical protein -
  V5F93_RS06270 (V5F93_06275) - 1199039..1199692 (+) 654 WP_124728926.1 IS1595 family transposase -
  V5F93_RS06275 (V5F93_06280) - 1199966..1200292 (+) 327 Protein_1227 hypothetical protein -
  V5F93_RS06280 (V5F93_06285) - 1200562..1200709 (+) 148 Protein_1228 peptidase -
  V5F93_RS06285 (V5F93_06290) comE 1200643..1201038 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5F93_RS06290 (V5F93_06295) - 1201140..1201259 (-) 120 Protein_1230 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=849065 V5F93_RS06285 WP_003703428.1 1200643..1201038(-) (comE) [Neisseria gonorrhoeae strain WHO_P_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=849065 V5F93_RS06285 WP_003703428.1 1200643..1201038(-) (comE) [Neisseria gonorrhoeae strain WHO_P_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1