Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QTL84_RS18175 Genome accession   NZ_CP128559
Coordinates   3626977..3627666 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain SH-1471     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621977..3632666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL84_RS18140 fliW 3622068..3622499 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  QTL84_RS18145 - 3622529..3623098 (-) 570 WP_003151397.1 DUF6470 family protein -
  QTL84_RS18150 flgL 3623189..3624106 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  QTL84_RS18155 flgK 3624118..3625635 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  QTL84_RS18160 - 3625651..3626133 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QTL84_RS18165 flgM 3626148..3626414 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTL84_RS18170 - 3626484..3626903 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  QTL84_RS18175 comFC 3626977..3627666 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  QTL84_RS18180 - 3627672..3627956 (-) 285 WP_014419011.1 competence protein ComFB -
  QTL84_RS18185 comFA 3628014..3629399 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  QTL84_RS18190 - 3629507..3630355 (-) 849 WP_003151387.1 DegV family protein -
  QTL84_RS18195 degU 3630453..3631142 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTL84_RS18200 degS 3631219..3632382 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=849012 QTL84_RS18175 WP_197535984.1 3626977..3627666(-) (comFC) [Bacillus velezensis strain SH-1471]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=849012 QTL84_RS18175 WP_197535984.1 3626977..3627666(-) (comFC) [Bacillus velezensis strain SH-1471]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598