Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F95_RS09050 Genome accession   NZ_CP145032
Coordinates   1734801..1735433 (+) Length   210 a.a.
NCBI ID   WP_269460797.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1729801..1740433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS09020 (V5F95_09030) - 1730152..1730634 (-) 483 WP_002215610.1 NADH-quinone oxidoreductase subunit B family protein -
  V5F95_RS09025 (V5F95_09035) - 1730625..1730981 (-) 357 WP_002216332.1 NADH-quinone oxidoreductase subunit A -
  V5F95_RS09030 (V5F95_09040) - 1731474..1732925 (-) 1452 WP_033909671.1 spermidine synthase -
  V5F95_RS09035 (V5F95_09045) - 1732948..1733568 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5F95_RS09040 (V5F95_09050) - 1733767..1734143 (-) 377 Protein_1757 transposase -
  V5F95_RS09045 (V5F95_09055) - 1734452..1734577 (-) 126 Protein_1758 IS110 family transposase -
  V5F95_RS09050 (V5F95_09060) pilE 1734801..1735433 (+) 633 WP_269460797.1 pilin Machinery gene
  V5F95_RS09055 (V5F95_09065) - 1735551..1735937 (+) 387 Protein_1760 pilin -
  V5F95_RS09060 (V5F95_09070) - 1735978..1736328 (+) 351 Protein_1761 pilin -
  V5F95_RS09065 (V5F95_09075) - 1736369..1736719 (+) 351 Protein_1762 pilin -
  V5F95_RS09070 (V5F95_09080) pilE 1736776..1737084 (+) 309 WP_269460796.1 pilin Machinery gene
  V5F95_RS09075 (V5F95_09090) lpxC 1737751..1738674 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F95_RS09080 (V5F95_09095) - 1738803..1739255 (+) 453 Protein_1765 pilin -
  V5F95_RS09085 (V5F95_09100) - 1739221..1739547 (+) 327 Protein_1766 pilin -
  V5F95_RS09090 (V5F95_09105) pilE 1739965..1740108 (+) 144 WP_003691943.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22558.43 Da        Isoelectric Point: 9.1837

>NTDB_id=849008 V5F95_RS09050 WP_269460797.1 1734801..1735433(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
MATVRLCRWVALPLPELRNGCLPWAGAGGGRAVCRYDTEVPIYKGGLQPAKSTNSAESTDSRRRHSRISGNDEAILLAEG
QKSAVTEYYLNHGEWPENNTSAGVASASKIIGKYVKEVKVEKGVVTATMASSNVNKEIQGKKLSLWAKRQDGSVKWFCGQ
PVTRDDKAGTVTDAAGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=849008 V5F95_RS09050 WP_269460797.1 1734801..1735433(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
TTGGCAACTGTCCGGTTGTGCCGATGGGTTGCCCTGCCGCTCCCTGAGCTACGCAACGGTTGTCTGCCTTGGGCGGGCGC
GGGTGGCGGCCGGGCGGTTTGTCGCTATGATACGGAAGTTCCGATATACAAGGGCGGGCTTCAGCCCGCCAAATCCACCA
ACTCCGCCGAATCCACCGATTCCCGCCGCCGTCATTCCCGCATAAGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGT
CAAAAATCAGCCGTTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCGC
TTCAAAAATCATAGGCAAATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCACAATGGCTTCAAGCAACG
TAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAG
CCGGTTACGCGCGACGACAAAGCCGGCACCGTCACCGACGCCGCCGGCAACGACGGCAAAATCGACACCAAGCACCTGCC
GTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(73-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

78.4

59.524

0.467
  pilE Neisseria gonorrhoeae MS11

78.4

59.524

0.467