Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G02_RS09160 Genome accession   NZ_CP145026
Coordinates   1757081..1757608 (+) Length   175 a.a.
NCBI ID   WP_229690230.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752081..1762608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS09145 (V5G02_09160) glmS 1752737..1754575 (+) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  V5G02_RS09150 (V5G02_09165) metG 1754691..1756745 (+) 2055 WP_050154644.1 methionine--tRNA ligase -
  V5G02_RS09155 (V5G02_09170) - 1756820..1757128 (-) 309 Protein_1780 NAD(P)-dependent oxidoreductase -
  V5G02_RS09160 (V5G02_09175) pilE 1757081..1757608 (+) 528 WP_229690230.1 pilin Machinery gene
  V5G02_RS09165 (V5G02_09180) - 1757661..1758017 (+) 357 Protein_1782 pilin -
  V5G02_RS09170 (V5G02_09185) - 1758036..1758382 (+) 347 Protein_1783 pilin -
  V5G02_RS09175 (V5G02_09190) - 1758422..1758786 (+) 365 Protein_1784 pilin -
  V5G02_RS09180 (V5G02_09195) pilE 1759187..1759615 (+) 429 WP_050154588.1 pilin Machinery gene
  V5G02_RS09185 (V5G02_09200) thiC 1760103..1762004 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19102.46 Da        Isoelectric Point: 9.2614

>NTDB_id=848867 V5G02_RS09160 WP_229690230.1 1757081..1757608(+) (pilE) [Neisseria gonorrhoeae strain WHO_S2_2024]
MDQNRTRLHLPQFVFAGHYPNHGKWPENNGAAGVASPASDIKGKYVQSVTVANGVVTAQMKSDGVNKEIKNKKLSLWARR
EAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIETKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEID
TKHLPSTCRDKSSAE

Nucleotide


Download         Length: 528 bp        

>NTDB_id=848867 V5G02_RS09160 WP_229690230.1 1757081..1757608(+) (pilE) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATTGATCAAAACCGCACCCGGCTTCATCTGCCGCAATTCGTTTTCGCCGGACATTACCCGAATCACGGCAAATGGCCGGA
AAACAACGGCGCTGCCGGCGTGGCATCCCCCGCCTCCGACATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAACG
GCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGT
GAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGT
CACCGGCAACGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCT
GCGGACAGCCGGTTACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGAC
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.755

60.571

0.429
  pilE Neisseria gonorrhoeae strain FA1090

69.811

60.571

0.423