Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QTN52_RS01750 Genome accession   NZ_CP128551
Coordinates   330344..330781 (-) Length   145 a.a.
NCBI ID   WP_289616906.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123441     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325344..335781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS01725 (QTN52_01725) - 326365..327501 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  QTN52_RS01730 (QTN52_01730) - 327515..327949 (+) 435 WP_061861834.1 RDD family protein -
  QTN52_RS01735 (QTN52_01735) - 328021..328344 (+) 324 WP_007409357.1 YckD family protein -
  QTN52_RS01740 (QTN52_01740) - 328448..329884 (+) 1437 WP_134986369.1 family 1 glycosylhydrolase -
  QTN52_RS01745 (QTN52_01745) nin/comJ 329925..330323 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  QTN52_RS01750 (QTN52_01750) nucA/comI 330344..330781 (-) 438 WP_289616906.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN52_RS01755 (QTN52_01755) hxlB 331112..331669 (-) 558 WP_134986370.1 6-phospho-3-hexuloisomerase -
  QTN52_RS01760 (QTN52_01760) hxlA 331666..332301 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  QTN52_RS01765 (QTN52_01765) - 332533..332895 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=848820 QTN52_RS01750 WP_289616906.1 330344..330781(-) (nucA/comI) [Bacillus velezensis strain SRCM123441]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDREGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=848820 QTN52_RS01750 WP_289616906.1 330344..330781(-) (nucA/comI) [Bacillus velezensis strain SRCM123441]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGAAGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634