Detailed information NTG0848768

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU680_RS04360
• Genome accession: NZ_CP128549
• Coordinates: 925513..926379 (-)
• Length: 288 a.a.
• NCBI ID: WP_016713385.1
• Uniprot ID: -
• Organism: Pseudomonas monteilii strain NMI985_06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 920513..931379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU680_RS04325 (LU680_04325)	-	921043..922338 (-)	1296	WP_016713389.1	NAD(P)/FAD-dependent oxidoreductase	-
LU680_RS04330 (LU680_04330)	-	922423..922596 (-)	174	WP_013970765.1	DUF3094 family protein	-
LU680_RS04335 (LU680_04335)	-	922729..923358 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LU680_RS04340 (LU680_04340)	-	923414..923845 (-)	432	WP_016713388.1	hypothetical protein	-
LU680_RS04345 (LU680_04345)	-	923932..924639 (+)	708	WP_016713387.1	energy-coupling factor ABC transporter permease	-
LU680_RS04350 (LU680_04350)	yacG	924693..924893 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
LU680_RS04355 (LU680_04355)	coaE	924890..925513 (-)	624	WP_016713386.1	dephospho-CoA kinase	-
LU680_RS04360 (LU680_04360)	pilD	925513..926379 (-)	867	WP_016713385.1	A24 family peptidase	Machinery gene
LU680_RS04365 (LU680_04365)	-	926382..927590 (-)	1209	WP_016713384.1	type II secretion system F family protein	-
LU680_RS04370 (LU680_04370)	-	927807..928217 (+)	411	WP_016713383.1	pilin	-
LU680_RS04380 (LU680_04380)	-	928593..929948 (+)	1356	WP_016713382.1	HipA domain-containing protein	-
LU680_RS04385 (LU680_04385)	-	929945..930436 (+)	492	WP_016713381.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31975.19 Da
• Isoelectric Point: 7.3029

>NTDB_id=848768 LU680_RS04360 WP_016713385.1 925513..926379(-) (pilD) [Pseudomonas monteilii strain NMI985_06]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGHCSACKTRISPRYPMVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=848768 LU680_RS04360 WP_016713385.1 925513..926379(-) (pilD) [Pseudomonas monteilii strain NMI985_06]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TGCCGGTTACGCAGCACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTTATCAGTTACCTGGCATTGCGCGGGCATTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGATGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCTTTCAACCTGTACGCCCCGCTAACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGTTGTTGCTGTCATCGGTGGTGGGTGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Acinetobacter baumannii D1279779	51.246	97.569	0.5
pilD	Acinetobacter nosocomialis M2	51.88	92.361	0.479
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Neisseria gonorrhoeae MS11	48.507	93.056	0.451