Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU664_RS07235 Genome accession   NZ_CP128548
Coordinates   1587882..1588517 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas kurunegalensis strain NMI3456_12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582882..1593517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU664_RS07215 (LU664_007215) - 1582911..1583843 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  LU664_RS07220 (LU664_007220) - 1583840..1584619 (+) 780 WP_060498742.1 ABC transporter permease -
  LU664_RS07225 (LU664_007225) - 1584623..1585135 (-) 513 Protein_1389 DUF2062 domain-containing protein -
  LU664_RS07230 (LU664_007230) comA 1585278..1587491 (+) 2214 WP_164524237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU664_RS07235 (LU664_007235) exbB 1587882..1588517 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU664_RS07240 (LU664_007240) - 1588514..1588948 (+) 435 WP_104835340.1 biopolymer transporter ExbD -
  LU664_RS07245 (LU664_007245) lpxK 1588948..1589949 (+) 1002 WP_060498746.1 tetraacyldisaccharide 4'-kinase -
  LU664_RS07250 (LU664_007250) - 1589994..1590179 (+) 186 WP_003247142.1 Trm112 family protein -
  LU664_RS07255 (LU664_007255) kdsB 1590176..1590940 (+) 765 WP_060498747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU664_RS07260 (LU664_007260) - 1590940..1591404 (+) 465 WP_060498748.1 low molecular weight protein-tyrosine-phosphatase -
  LU664_RS07265 (LU664_007265) murB 1591401..1592420 (+) 1020 WP_060498749.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=848748 LU664_RS07235 WP_016391244.1 1587882..1588517(+) (exbB) [Pseudomonas kurunegalensis strain NMI3456_12]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848748 LU664_RS07235 WP_016391244.1 1587882..1588517(+) (exbB) [Pseudomonas kurunegalensis strain NMI3456_12]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGGGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCGGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCT
GCAGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829