Detailed information NTG0848700

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU654_RS03445
• Genome accession: NZ_CP128546
• Coordinates: 752724..753590 (-)
• Length: 288 a.a.
• NCBI ID: WP_232891796.1
• Uniprot ID: -
• Organism: Pseudomonas monteilii strain NMI8712_11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 747724..758590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU654_RS03410 (LU654_003410)	-	748254..749549 (-)	1296	WP_016713389.1	NAD(P)/FAD-dependent oxidoreductase	-
LU654_RS03415 (LU654_003415)	-	749634..749807 (-)	174	WP_013970765.1	DUF3094 family protein	-
LU654_RS03420 (LU654_003420)	-	749940..750569 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LU654_RS03425 (LU654_003425)	-	750625..751056 (-)	432	WP_016713388.1	hypothetical protein	-
LU654_RS03430 (LU654_003430)	-	751143..751850 (+)	708	WP_016713387.1	energy-coupling factor ABC transporter permease	-
LU654_RS03435 (LU654_003435)	yacG	751904..752104 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
LU654_RS03440 (LU654_003440)	coaE	752101..752724 (-)	624	WP_016713386.1	dephospho-CoA kinase	-
LU654_RS03445 (LU654_003445)	pilD	752724..753590 (-)	867	WP_232891796.1	A24 family peptidase	Machinery gene
LU654_RS03450 (LU654_003450)	-	753593..754801 (-)	1209	WP_016713384.1	type II secretion system F family protein	-
LU654_RS03455 (LU654_003455)	-	755018..755428 (+)	411	WP_016713383.1	pilin	-
LU654_RS03465 (LU654_003465)	-	755804..757159 (+)	1356	WP_016713382.1	HipA domain-containing protein	-
LU654_RS03470 (LU654_003470)	-	757156..757647 (+)	492	WP_016713381.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32005.22 Da
• Isoelectric Point: 7.3029

>NTDB_id=848700 LU654_RS03445 WP_232891796.1 752724..753590(-) (pilD) [Pseudomonas monteilii strain NMI8712_11]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGHCSACKTRISPRYPMVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLTIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=848700 LU654_RS03445 WP_232891796.1 752724..753590(-) (pilD) [Pseudomonas monteilii strain NMI8712_11]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TGCCGGTTACGCAGCACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTTATCAGTTACCTGGCATTGCGCGGGCATTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGATGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCTTTCAACCTGTACGCCCCGCTAACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGTTGTTGCTGTCATCGGTGGTGGGTGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGACGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.069	96.181	0.51
pilD	Acinetobacter baumannii D1279779	52.256	92.361	0.483
pilD	Acinetobacter nosocomialis M2	51.504	92.361	0.476
pilD	Vibrio campbellii strain DS40M4	48.201	96.528	0.465
pilD	Neisseria gonorrhoeae MS11	48.881	93.056	0.455