Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5G05_RS09935 Genome accession   NZ_CP145019
Coordinates   1899020..1899415 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_X_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894020..1904415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G05_RS09930 (V5G05_09950) - 1898799..1898918 (+) 120 Protein_1922 competence protein ComE -
  V5G05_RS09935 (V5G05_09955) comE 1899020..1899415 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5G05_RS09940 (V5G05_09960) - 1899820..1900269 (-) 450 WP_012504156.1 transposase -
  V5G05_RS09945 (V5G05_09965) dnaJ 1900403..1901524 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  V5G05_RS09950 (V5G05_09970) - 1901719..1903737 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  V5G05_RS09955 (V5G05_09975) rfbC 1903781..1904338 (-) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=848660 V5G05_RS09935 WP_003703428.1 1899020..1899415(+) (comE) [Neisseria gonorrhoeae strain WHO_X_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=848660 V5G05_RS09935 WP_003703428.1 1899020..1899415(+) (comE) [Neisseria gonorrhoeae strain WHO_X_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1