Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU678_RS09805 Genome accession   NZ_CP128544
Coordinates   2061509..2062144 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas mosselii strain NMI4849_14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056509..2067144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU678_RS09785 (LU678_009785) - 2056732..2057664 (+) 933 WP_028690973.1 ABC transporter ATP-binding protein -
  LU678_RS09790 (LU678_009790) - 2057661..2058440 (+) 780 WP_028690974.1 ABC transporter permease -
  LU678_RS09795 (LU678_009795) - 2058324..2058965 (-) 642 WP_139121109.1 DUF2062 domain-containing protein -
  LU678_RS09800 (LU678_009800) comA 2059110..2061326 (+) 2217 WP_232853716.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU678_RS09805 (LU678_009805) exbB 2061509..2062144 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU678_RS09810 (LU678_009810) - 2062141..2062575 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  LU678_RS09815 (LU678_009815) lpxK 2062575..2063579 (+) 1005 WP_062361664.1 tetraacyldisaccharide 4'-kinase -
  LU678_RS09820 (LU678_009820) - 2063614..2063799 (+) 186 WP_011532874.1 Trm112 family protein -
  LU678_RS09825 (LU678_009825) kdsB 2063796..2064560 (+) 765 WP_028690979.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU678_RS09830 (LU678_009830) - 2064560..2065024 (+) 465 WP_069017523.1 low molecular weight protein-tyrosine-phosphatase -
  LU678_RS09835 (LU678_009835) murB 2065021..2066040 (+) 1020 WP_028690981.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=848656 LU678_RS09805 WP_028690976.1 2061509..2062144(+) (exbB) [Pseudomonas mosselii strain NMI4849_14]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848656 LU678_RS09805 WP_028690976.1 2061509..2062144(+) (exbB) [Pseudomonas mosselii strain NMI4849_14]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCGATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATTAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829