Detailed information NTG0848654

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU678_RS05030
• Genome accession: NZ_CP128544
• Coordinates: 1063605..1064471 (-)
• Length: 288 a.a.
• NCBI ID: WP_232854054.1
• Uniprot ID: -
• Organism: Pseudomonas mosselii strain NMI4849_14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1058605..1069471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU678_RS04995 (LU678_004995)	-	1059932..1060105 (-)	174	WP_023631877.1	DUF3094 family protein	-
LU678_RS05000 (LU678_005000)	-	1060238..1060867 (-)	630	WP_069016168.1	DUF1780 domain-containing protein	-
LU678_RS05005 (LU678_005005)	-	1060923..1061354 (-)	432	WP_232854056.1	hypothetical protein	-
LU678_RS05010 (LU678_005010)	-	1061441..1062148 (+)	708	WP_028689887.1	energy-coupling factor ABC transporter permease	-
LU678_RS05015 (LU678_005015)	-	1062326..1062574 (-)	249	WP_028689886.1	hypothetical protein	-
LU678_RS05020 (LU678_005020)	yacG	1062785..1062985 (-)	201	WP_011535705.1	DNA gyrase inhibitor YacG	-
LU678_RS05025 (LU678_005025)	coaE	1062982..1063605 (-)	624	WP_232854055.1	dephospho-CoA kinase	-
LU678_RS05030 (LU678_005030)	pilD	1063605..1064471 (-)	867	WP_232854054.1	A24 family peptidase	Machinery gene
LU678_RS05035 (LU678_005035)	-	1064474..1065682 (-)	1209	WP_232854053.1	type II secretion system F family protein	-
LU678_RS05040 (LU678_005040)	-	1065910..1066320 (+)	411	WP_232854052.1	pilin	-
LU678_RS05050 (LU678_005050)	-	1066616..1066849 (+)	234	Protein_984	integrase arm-type DNA-binding domain-containing protein	-
LU678_RS05055 (LU678_005055)	-	1067191..1068341 (+)	1151	WP_104834651.1	IS3 family transposase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31556.68 Da
• Isoelectric Point: 7.0182

>NTDB_id=848654 LU678_RS05030 WP_232854054.1 1063605..1064471(-) (pilD) [Pseudomonas mosselii strain NMI4849_14]
MNAWAVIVDHPPFFYALAAVLGLLVGSFLNVLAYRLPLMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA
WENIPVLSYLALRGRCSGCKTRISAHYPLVELATALLSLLVAWHFGPGVEALAVMLLTWGLIGLSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLADAVWGAVAGYLSLWTVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLASLVGA
LIGLTLVRLKRTQMGAALPFGPYLAIAGWIAVLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=848654 LU678_RS05030 WP_232854054.1 1063605..1064471(-) (pilD) [Pseudomonas mosselii strain NMI4849_14]
ATGAATGCCTGGGCCGTAATCGTCGATCATCCGCCGTTCTTCTATGCCCTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTATCGGCTGCCGCTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAGGAGGTGCTGGGGT
TGCCGCAGGCCGAGCACGAGCGTTTCGACCTGTGCCTGCCGGCGTCGCGTTGCCCGCATTGCCAGCGCCCGATCCGGGCG
TGGGAAAACATTCCGGTACTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCGGGGTGCAAGACGCGGATCAGTGCGCATTA
TCCACTGGTGGAGCTGGCCACCGCCCTGTTGTCGCTGCTGGTGGCCTGGCATTTCGGGCCGGGCGTGGAGGCGCTGGCGG
TGATGCTGCTGACCTGGGGCCTGATCGGCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGCTGGTGGTCAACGCCTTCGGGCTGCTGGTGCCGCTGGCCGACGCGGTGTGGGGCGCGGTGGC
GGGTTACCTGAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGATTTCA
AGCTGCTGGCCATGCTCGGGGCGTGGGGCGGTTGGCAGATTTTGCCGCTGACCTTGATGCTGGCCTCGCTGGTGGGGGCG
TTGATCGGGCTGACGCTGGTGCGTTTGAAGCGCACGCAGATGGGCGCTGCGCTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCCGTGCTCTGGGGTGATGAAATAGTCGCTTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.48	96.875	0.528
pilD	Acinetobacter baumannii D1279779	52.03	94.097	0.49
pilD	Neisseria gonorrhoeae MS11	51.673	93.403	0.483
pilD	Acinetobacter nosocomialis M2	50.923	94.097	0.479
pilD	Vibrio campbellii strain DS40M4	49.097	96.181	0.472