Detailed information NTG0848643

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU688_RS23435
• Genome accession: NZ_CP128543
• Coordinates: 5082192..5083058 (+)
• Length: 288 a.a.
• NCBI ID: WP_160290908.1
• Uniprot ID: -
• Organism: Pseudomonas soli strain NMI4264_15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5077192..5088058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU688_RS23415 (LU688_23415)	-	5078717..5080045 (-)	1329	WP_160290910.1	integrase arm-type DNA-binding domain-containing protein	-
LU688_RS23425 (LU688_23425)	-	5080344..5080754 (-)	411	WP_102682141.1	pilin	-
LU688_RS23430 (LU688_23430)	-	5080981..5082189 (+)	1209	WP_160290909.1	type II secretion system F family protein	-
LU688_RS23435 (LU688_23435)	pilD	5082192..5083058 (+)	867	WP_160290908.1	A24 family peptidase	Machinery gene
LU688_RS23440 (LU688_23440)	coaE	5083058..5083681 (+)	624	WP_038706809.1	dephospho-CoA kinase	-
LU688_RS23445 (LU688_23445)	yacG	5083678..5083878 (+)	201	WP_046854173.1	DNA gyrase inhibitor YacG	-
LU688_RS23450 (LU688_23450)	-	5083936..5084643 (-)	708	WP_023632865.1	energy-coupling factor ABC transporter permease	-
LU688_RS23455 (LU688_23455)	-	5084730..5085161 (+)	432	WP_160290907.1	hypothetical protein	-
LU688_RS23460 (LU688_23460)	-	5085217..5085846 (+)	630	WP_038706811.1	DUF1780 domain-containing protein	-
LU688_RS23465 (LU688_23465)	-	5085979..5086152 (+)	174	WP_023631877.1	DUF3094 family protein	-
LU688_RS23470 (LU688_23470)	-	5086237..5087532 (+)	1296	WP_038706812.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31715.87 Da
• Isoelectric Point: 7.7111

>NTDB_id=848643 LU688_RS23435 WP_160290908.1 5082192..5083058(+) (pilD) [Pseudomonas soli strain NMI4264_15]
MNAWTVIVDHPPFFHTLAAVLGLLVGSFLNVLAYRLPIMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRQIRA
WENIPLLSYLALRGRCAGCKARISARYPLVELGSALLSLLVAWHFGPGVAALWVMLLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLIVNAFGLLVPLSDALWGAVAGYLSLWSVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLASLVGA
LVGLTLVRFKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=848643 LU688_RS23435 WP_160290908.1 5082192..5083058(+) (pilD) [Pseudomonas soli strain NMI4264_15]
ATGAATGCCTGGACCGTAATCGTCGATCATCCGCCGTTCTTCCATACCTTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTATCGGCTGCCGATCATGCTCGAGCGCCAGTGGCAGCGGGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCATGAGCGCTTCGACCTGTGCCTGCCGGCTTCGCGTTGTCCGCACTGCCAGCGCCAGATCCGCGCC
TGGGAAAATATTCCGCTGCTGAGTTACCTGGCCCTGCGCGGGCGTTGCGCGGGGTGCAAGGCGCGGATCAGCGCGCGTTA
TCCCTTGGTTGAGCTGGGCAGCGCCCTGCTCTCGTTGTTGGTGGCCTGGCATTTCGGGCCGGGTGTCGCGGCGCTGTGGG
TGATGCTGCTGACGTGGGGGCTGATCGCCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGTTGATCGTCAACGCCTTCGGGCTGCTGGTGCCGCTGAGCGATGCGCTGTGGGGCGCGGTGGC
GGGTTACCTGAGTTTGTGGTCGGTGTACTGGGTCTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTTCGGCGACTTCA
AGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGATGCTGGCGTCCTTGGTGGGGGCG
CTGGTCGGGCTGACGCTGGTGCGTTTCAAGCGCACGCAAATGGGCGCGGCATTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCATACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.197	96.875	0.535
pilD	Neisseria gonorrhoeae MS11	51.301	93.403	0.479
pilD	Vibrio campbellii strain DS40M4	49.819	96.181	0.479
pilD	Acinetobacter baumannii D1279779	51.119	93.056	0.476
pilD	Acinetobacter nosocomialis M2	50.746	93.056	0.472