Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LU690_RS07370 Genome accession   NZ_CP128541
Coordinates   1608557..1610770 (+) Length   737 a.a.
NCBI ID   WP_028699304.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain NMI135_16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1603557..1615770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU690_RS07350 (LU690_07350) - 1605432..1606055 (+) 624 WP_016715123.1 glutathione S-transferase -
  LU690_RS07355 (LU690_07355) - 1606190..1607122 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  LU690_RS07360 (LU690_07360) - 1607119..1607898 (+) 780 WP_016715125.1 ABC transporter permease -
  LU690_RS07365 (LU690_07365) - 1607902..1608414 (-) 513 Protein_1428 DUF2062 domain-containing protein -
  LU690_RS07370 (LU690_07370) comA 1608557..1610770 (+) 2214 WP_028699304.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU690_RS07375 (LU690_07375) exbB 1610895..1611530 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU690_RS07380 (LU690_07380) - 1611527..1611961 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  LU690_RS07385 (LU690_07385) lpxK 1611961..1612962 (+) 1002 WP_016715128.1 tetraacyldisaccharide 4'-kinase -
  LU690_RS07390 (LU690_07390) - 1613007..1613192 (+) 186 WP_003247142.1 Trm112 family protein -
  LU690_RS07395 (LU690_07395) kdsB 1613189..1613953 (+) 765 WP_016715129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU690_RS07400 (LU690_07400) - 1613953..1614417 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  LU690_RS07405 (LU690_07405) murB 1614414..1615433 (+) 1020 WP_016715131.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79240.26 Da        Isoelectric Point: 10.3450

>NTDB_id=848591 LU690_RS07370 WP_028699304.1 1608557..1610770(+) (comA) [Pseudomonas monteilii strain NMI135_16]
MRTGMFALALGLLCLGFLPVLPSVGWLIALAACAVASLFTRVWPLGCFLLGLCWACGSAQLALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELDAARSRRAELPQRLQLSWFGGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGRTAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPVRLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALLPLLLALVVVLLVEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGAVLLPLGGVGEALLWLAGGLLDGLFQLLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGETDLGERVVLPTLRKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALEDVPLQPCVGDERWEWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDIEAAAERAWL
ADAEAPRIDWLQAPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVVERYRRHGLAVHDTAVDGALRLVLGRQG
EVEGVRRQRRLWRAQLD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=848591 LU690_RS07370 WP_028699304.1 1608557..1610770(+) (comA) [Pseudomonas monteilii strain NMI135_16]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGTACTGCCATCGGTCGGATGGTT
GATCGCGCTGGCTGCCTGCGCTGTCGCCAGCCTGTTCACCCGCGTGTGGCCGTTGGGTTGTTTTCTGCTGGGTTTGTGTT
GGGCTTGCGGGTCTGCTCAGCTGGCCCTTGATGATCGCCTGGCTGCCGGCCTGGATGGTCGCACCTTGTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGCCCGAACGGCACAAGGTGTGCGCTTCGAGCTGGACGCGGCACGCTCGCGGCGGGCCGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGGTGGGCCGCCTCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGTTGAACCCGCATGGGCCGGACCGCGAAGCGCAACTGCTGGCGCGGCGGGTGGGTGCCACGGGC
ACGGTCAAGGCAGGGCAGCTGCTGGCGCCAGTAACCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTCGCAGTCGA
GGCCAATGGCCGAACGGCGGCGTTGGTGGCGCTGGTGCTGGGCGATGGGGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACTGGCACGGTGCACCTGCTGGTGATTTCTGGCCAGCACATCGGCCTGGTGGCCGGTTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCTGTACGGCTGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCCATGGCCGC
TGCGCTGGCGTACGGTTGGCTGGCCGGTGCGGGCGTGCCAGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGTTTTCGCCACCTCGGTGCACTGTTGCCGCTGTTGCTGGCGCTGGTCGTGGTGTTGCTGGTCGAACCGCTG
GCGGCATTGTTGCCTGGGTTCTGGCTGTCGTTTGCCGCCGTGGCCACGCTCATTTATTGCTTCAGTGCCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTAATTGCCATCGGTTTGCTACCGGTACTGTTGGCTACTGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCGAACCTTGTAGCGGTGCCATGGGTCAGCCTGGCGGTGCTGCCGTTGGCGTTG
CTGGGCGCGGTGCTGCTGCCGCTGGGCGGGGTAGGGGAGGCGCTGCTGTGGCTGGCGGGAGGCCTGCTGGATGGGCTGTT
CCAGCTGCTGGCGCTGGTGGCACAGCAGCGCCCGGCATGGGTGCCGCCGGCCTTGCCACTGTGGGCCTGGCTGCTGGTGT
GTCTGGGCGCGCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGTTGCGTGGGTTGGGGGGGGTGATGCTGCTGGCCCTCTGG
GTGCCCAGGGAGCCGGTGCCGCTAGGGCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATCACAGCCTGCTGTACGACGCTGGGCCGGCCAGAGGCGAAACCGACCTGGGCGAGCGGGTGGTGCTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTTGACCTGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAAGCGCTGGAGGATGTGCCATTGCAGCCTTGCGTCGG
TGATGAACGGTGGGAGTGGGATGGTGTGCGTTTTTCGCTATGGCGCTGGGCAGACGGGCAGAGCAGCAATGACCGCTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGCGAGCGCCTGTTGCTGGCGGGGGATATCGAAGCCGCTGCCGAACGGGCCTGGCTG
GCAGACGCTGAAGCGCCGCGCATCGACTGGTTGCAGGCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGTGCTACCGCACCGCGGGGGGTATTGATTTCGAGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTGGTGG
AGCGTTACCGGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGACGGGGCATTGCGGTTGGTGTTGGGGCGGCAGGGG
GAGGTTGAGGGCGTGCGCCGGCAGCGGCGGCTCTGGCGGGCTCAACTGGATTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.639

97.829

0.583
  comA Ralstonia pseudosolanacearum GMI1000

36.563

100

0.384