Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QUE04_RS09620 Genome accession   NZ_AP027206
Coordinates   2001086..2001823 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JNE082640     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1996086..2006823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE04_RS09590 (JNE082640_18200) yfiL 1996244..1996609 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QUE04_RS09595 (JNE082640_18210) aroF 1996819..1997889 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QUE04_RS09600 (JNE082640_18220) tyrA 1997900..1999021 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QUE04_RS09605 (JNE082640_18230) pheA 1999064..2000224 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  QUE04_RS09610 pheL 2000323..2000370 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QUE04_RS09615 (JNE082640_18240) raiA 2000474..2000815 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QUE04_RS09620 (JNE082640_18250) comL 2001086..2001823 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QUE04_RS09625 (JNE082640_18260) rluD 2001958..2002938 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QUE04_RS09630 (JNE082640_18270) yfiH 2002935..2003666 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  QUE04_RS09635 (JNE082640_18280) clpC 2003796..2006369 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=84858 QUE04_RS09620 WP_000197686.1 2001086..2001823(-) (comL) [Escherichia coli strain JNE082640]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=84858 QUE04_RS09620 WP_000197686.1 2001086..2001823(-) (comL) [Escherichia coli strain JNE082640]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment