Detailed information NTG0848562

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LU682_RS03400
• Genome accession: NZ_CP128540
• Coordinates: 753851..754717 (-)
• Length: 288 a.a.
• NCBI ID: WP_010951890.1
• Uniprot ID: Q88Q64
• Organism: Pseudomonas alloputida strain NMI24_14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 748851..759717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU682_RS03365 (LU682_003365)	-	749323..750618 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
LU682_RS03370 (LU682_003370)	-	750703..750876 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
LU682_RS03375 (LU682_003375)	-	751009..751638 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
LU682_RS03380 (LU682_003380)	-	751694..752125 (-)	432	WP_049588119.1	hypothetical protein	-
LU682_RS03385 (LU682_003385)	-	752212..752919 (+)	708	WP_049588121.1	energy-coupling factor ABC transporter permease	-
LU682_RS03390 (LU682_003390)	yacG	753031..753231 (-)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
LU682_RS03395 (LU682_003395)	coaE	753228..753851 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
LU682_RS03400 (LU682_003400)	pilD	753851..754717 (-)	867	WP_010951890.1	A24 family peptidase	Machinery gene
LU682_RS03405 (LU682_003405)	-	754720..755928 (-)	1209	WP_010951891.1	type II secretion system F family protein	-
LU682_RS03410 (LU682_003410)	-	756145..756555 (+)	411	WP_010951892.1	pilin	-
LU682_RS03420 (LU682_003420)	-	756864..758159 (+)	1296	WP_060489696.1	integrase arm-type DNA-binding domain-containing protein	-
LU682_RS03425 (LU682_003425)	-	758449..759405 (+)	957	WP_060489698.1	hypothetical protein	-
LU682_RS03430 (LU682_003430)	-	759458..759667 (+)	210	Protein_654	AlpA family phage regulatory protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31830.86 Da
• Isoelectric Point: 7.5986

>NTDB_id=848562 LU682_RS03400 WP_010951890.1 753851..754717(-) (pilD) [Pseudomonas alloputida strain NMI24_14]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALVALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LFGLCLLRFRRDAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=848562 LU682_RS03400 WP_010951890.1 753851..754717(-) (pilD) [Pseudomonas alloputida strain NMI24_14]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGGTGG
CTCTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: Q88Q64

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	49.822	97.569	0.486
pilD	Acinetobacter nosocomialis M2	49.11	97.569	0.479
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451