NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QUC26_RS03835	Genome accession	NZ_CP128508
Coordinates	841537..842403 (-)	Length	288 a.a.
NCBI ID	WP_289332030.1	Uniprot ID	-
Organism	Pseudomonas asiatica strain F19-1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 836537..847403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUC26_RS03800 (QUC26_03800)	-	836984..838279 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
QUC26_RS03805 (QUC26_03805)	-	838364..838537 (-)	174	WP_013970765.1	DUF3094 family protein	-
QUC26_RS03810 (QUC26_03810)	-	838671..839300 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
QUC26_RS03815 (QUC26_03815)	-	839356..839787 (-)	432	WP_015268860.1	hypothetical protein	-
QUC26_RS03820 (QUC26_03820)	-	839874..840581 (+)	708	WP_038408631.1	energy-coupling factor ABC transporter permease	-
QUC26_RS03825 (QUC26_03825)	yacG	840717..840917 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
QUC26_RS03830 (QUC26_03830)	coaE	840914..841537 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
QUC26_RS03835 (QUC26_03835)	pilD	841537..842403 (-)	867	WP_289332030.1	A24 family peptidase	Machinery gene
QUC26_RS03840 (QUC26_03840)	-	842406..843614 (-)	1209	WP_013970771.1	type II secretion system F family protein	-
QUC26_RS03845 (QUC26_03845)	-	843830..844240 (+)	411	WP_023660630.1	pilin	-
QUC26_RS03855 (QUC26_03855)	-	844552..845880 (+)	1329	WP_289332031.1	integrase arm-type DNA-binding domain-containing protein	-

Sequence

Protein

Download Length: 288 a.a. Molecular weight: 32030.23 Da Isoelectric Point: 8.2287

                                >NTDB_id=848145 QUC26_RS03835 WP_289332030.1 841537..842403(-) (pilD) [Pseudomonas asiatica strain F19-1]

MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLQLPITPHERFDLWLPASRCPHCAHRIRA

WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL

PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA

LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

Download Length: 867 bp

                                >NTDB_id=848145 QUC26_RS03835 WP_289332030.1 841537..842403(-) (pilD) [Pseudomonas asiatica strain F19-1]

ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGTCTGCTGGTGGGCAG

TTTTCTCAACGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGCAGT

TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCCCATTGTGCGCATCGGATTCGCGCG

TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA

CCCGTTGGTGGAGCTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG

CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCTGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG

CCGATGCTGTGGCTGGGGTTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGCGCACTGTGGGGCGCGGTGGC

CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA

AGCTTATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCATCGGTGGTCGGGGCG

CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCGATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC

GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	54.545	95.486	0.521
pilD	Acinetobacter baumannii D1279779	52.143	97.222	0.507
pilD	Acinetobacter nosocomialis M2	51.429	97.222	0.5
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476

Detailed information NTG0848145