Detailed information NTG0848130

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QUC27_RS24370
• Genome accession: NZ_CP128507
• Coordinates: 5235964..5236836 (+)
• Length: 290 a.a.
• NCBI ID: WP_016852118.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain WS27-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5230964..5241836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUC27_RS24355 (QUC27_24355)	-	5232347..5232811 (-)	465	WP_003122079.1	pilin	-
QUC27_RS24360 (QUC27_24360)	pilB	5233042..5234742 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QUC27_RS24365 (QUC27_24365)	pilC	5234746..5235963 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
QUC27_RS24370 (QUC27_24370)	pilD	5235964..5236836 (+)	873	WP_016852118.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QUC27_RS24375 (QUC27_24375)	coaE	5236833..5237444 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
QUC27_RS24380 (QUC27_24380)	yacG	5237441..5237641 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QUC27_RS24385 (QUC27_24385)	-	5237678..5237887 (-)	210	WP_003094660.1	hypothetical protein	-
QUC27_RS24390 (QUC27_24390)	-	5237993..5238682 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QUC27_RS24395 (QUC27_24395)	-	5238679..5239149 (-)	471	WP_034034895.1	hypothetical protein	-
QUC27_RS24400 (QUC27_24400)	-	5239146..5239571 (-)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
QUC27_RS24405 (QUC27_24405)	-	5239704..5240333 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QUC27_RS24410 (QUC27_24410)	-	5240330..5240779 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
QUC27_RS24415 (QUC27_24415)	-	5240805..5240975 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31845.85 Da
• Isoelectric Point: 7.7068

>NTDB_id=848130 QUC27_RS24370 WP_016852118.1 5235964..5236836(+) (pilD) [Pseudomonas aeruginosa strain WS27-3]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=848130 QUC27_RS24370 WP_016852118.1 5235964..5236836(+) (pilD) [Pseudomonas aeruginosa strain WS27-3]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.561	95.862	0.466