Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QTN48_RS20100 Genome accession   NZ_CP128503
Coordinates   3914958..3915395 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123422     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3909958..3920395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS20085 (QTN48_20085) - 3912844..3913206 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  QTN48_RS20090 (QTN48_20090) hxlA 3913438..3914073 (+) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  QTN48_RS20095 (QTN48_20095) hxlB 3914070..3914627 (+) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  QTN48_RS20100 (QTN48_20100) nucA/comI 3914958..3915395 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN48_RS20105 (QTN48_20105) nin/comJ 3915416..3915814 (+) 399 WP_017419379.1 competence protein ComJ Regulator
  QTN48_RS20110 (QTN48_20110) - 3915855..3917291 (-) 1437 WP_104843069.1 family 1 glycosylhydrolase -
  QTN48_RS20115 (QTN48_20115) - 3917395..3917718 (-) 324 WP_007409357.1 YckD family protein -
  QTN48_RS20120 (QTN48_20120) - 3917790..3918224 (-) 435 WP_014416871.1 RDD family protein -
  QTN48_RS20125 (QTN48_20125) - 3918239..3919375 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=847957 QTN48_RS20100 WP_003156588.1 3914958..3915395(+) (nucA/comI) [Bacillus velezensis strain SRCM123422]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=847957 QTN48_RS20100 WP_003156588.1 3914958..3915395(+) (nucA/comI) [Bacillus velezensis strain SRCM123422]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641