Detailed information NTG0084793

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NK8_RS01160
• Genome accession: NZ_AP024322
• Coordinates: 234943..236199 (-)
• Length: 418 a.a.
• NCBI ID: WP_213226887.1
• Uniprot ID: -
• Organism: Caballeronia sp. NK8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 229943..241199

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NK8_RS01140 (NK8_02240)	ybiB	231612..232613 (-)	1002	WP_213226884.1	DNA-binding protein YbiB	-
NK8_RS01145 (NK8_02250)	-	232926..233624 (+)	699	WP_213226885.1	fumarylacetoacetate hydrolase family protein	-
NK8_RS01150 (NK8_02260)	maiA	233635..234279 (+)	645	WP_213228429.1	maleylacetoacetate isomerase	-
NK8_RS01155 (NK8_02270)	-	234276..234908 (+)	633	WP_213226886.1	LysE/ArgO family amino acid transporter	-
NK8_RS01160 (NK8_02280)	pilA	234943..236199 (-)	1257	WP_213226887.1	signal recognition particle-docking protein FtsY	Machinery gene
NK8_RS01165 (NK8_02290)	rsmD	236433..237059 (+)	627	WP_213226888.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NK8_RS01170 (NK8_02300)	coaD	237160..237666 (+)	507	WP_061172699.1	pantetheine-phosphate adenylyltransferase	-
NK8_RS01175 (NK8_02310)	-	237744..238004 (+)	261	WP_162064778.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NK8_RS01180 (NK8_02320)	hisC	238001..239068 (-)	1068	WP_213226889.1	histidinol-phosphate transaminase	-
NK8_RS01185 (NK8_02330)	pth	239082..239684 (-)	603	WP_162064780.1	aminoacyl-tRNA hydrolase	-
NK8_RS01190 (NK8_02340)	-	239789..240406 (-)	618	WP_061172703.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45123.43 Da
• Isoelectric Point: 4.4990

>NTDB_id=84793 NK8_RS01160 WP_213226887.1 234943..236199(-) (pilA) [Caballeronia sp. NK8]
MFSFFKKFKKPADAPLDTPQEDIVEADGDDDISDAELERQALSAEAPLEEALPEDIQPTEPAPPEPVAPVAPITAAPVQL
PAGDSKEYWQGRTQSQWARGPETDQASEEILPPPTLDPAAKKSWLSRLRHGLSKTSSNLTGIFVSAKIDEDLYEELETAL
LMSDAGVDATEFLLESLREKVRSERLTDASQVKAALRELLVDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAK
HLQRFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIYDAVGAARARKIDVMMADTAGRLPTQLHLMEE
LRKVRRVIAKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIARQRPVPVYFIGVGEK
VEDLQPFSAEEFADALLG

Nucleotide

• Length: 1257 bp

>NTDB_id=84793 NK8_RS01160 WP_213226887.1 234943..236199(-) (pilA) [Caballeronia sp. NK8]
ATGTTCAGCTTCTTCAAGAAATTCAAAAAGCCGGCTGACGCGCCGCTCGACACGCCTCAGGAAGACATCGTCGAGGCGGA
CGGGGACGACGACATCTCGGACGCCGAGCTGGAACGGCAGGCGCTCAGCGCCGAAGCCCCACTGGAAGAAGCGCTGCCGG
AGGATATTCAGCCGACGGAACCGGCGCCTCCCGAACCCGTCGCTCCTGTTGCGCCCATCACCGCTGCGCCCGTCCAGCTT
CCGGCCGGCGATTCGAAGGAATACTGGCAAGGCCGCACGCAGTCGCAATGGGCGCGTGGTCCGGAAACGGATCAGGCGAG
CGAAGAAATCCTGCCGCCGCCCACGCTCGATCCTGCTGCGAAGAAGTCGTGGCTTTCCCGCCTGCGTCACGGTCTGTCGA
AGACGAGTTCCAACCTGACCGGCATTTTCGTCAGCGCGAAGATCGATGAAGACCTGTACGAAGAGCTCGAAACCGCGCTG
CTGATGTCCGACGCCGGCGTCGACGCCACCGAATTCCTGCTCGAATCGCTGCGCGAAAAAGTGCGCTCGGAGCGTCTGAC
CGATGCATCGCAGGTGAAGGCCGCGCTGCGCGAATTGCTCGTCGACTTGCTGCGTCCGCTCGAAAAATCACTGATGCTCG
GCCGCGCGCAACCGCTCGTGATGATGATCGCGGGCGTGAACGGCGTCGGCAAGACGACCAGCATCGGCAAGCTGGCGAAG
CATCTGCAGCGCTTCGATCAGTCCGTGCTGCTCGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAACAGCTCACGGT
CTGGGGCGAGCGCAACAACGTGACCGTGATCGCGCAGGAAAGCGGCGATGCCGCCGCCGTGATTTACGACGCGGTCGGCG
CGGCGCGCGCGCGCAAGATCGACGTGATGATGGCCGACACCGCCGGCCGCCTGCCGACGCAATTGCATCTGATGGAAGAG
CTGCGCAAGGTGCGCCGCGTGATCGCGAAGGCGATGCCCGACGCGCCGCACGAAGTGCTGCTCGTGATCGATGCCAACAC
GGGTCAGAACGCGCTCGCGCAGGTCAAGGCGTTCGACGATGCGCTGGGTCTGACCGGTCTCGTCGTCACGAAACTCGACG
GCACCGCGAAAGGCGGCATTCTCGCCGCGATCGCGCGACAGCGGCCGGTGCCGGTGTATTTCATCGGCGTGGGCGAGAAG
GTCGAGGATCTGCAACCGTTCAGCGCCGAAGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (219-418)

• SRP54-type protein, helical bundle domain (SRP54_N) (138-198)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.469	100	0.514