Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QTN46_RS19905 Genome accession   NZ_CP128501
Coordinates   3669621..3669740 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3664621..3674740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS19885 (QTN46_19885) - 3665822..3666250 (-) 429 WP_013353951.1 DUF1934 domain-containing protein -
  QTN46_RS19890 (QTN46_19890) - 3666404..3666863 (+) 460 Protein_3903 bacteriocin biosynthesis protein AlbG -
  QTN46_RS19895 (QTN46_19895) - 3666869..3668263 (-) 1395 WP_289394003.1 YncE family protein -
  QTN46_RS19900 (QTN46_19900) rapF 3668492..3669637 (+) 1146 WP_013353955.1 tetratricopeptide repeat protein Regulator
  QTN46_RS19905 (QTN46_19905) phrF 3669621..3669740 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN46_RS19910 (QTN46_19910) speB 3669854..3670726 (-) 873 WP_013353956.1 agmatinase -
  QTN46_RS19915 (QTN46_19915) speE 3670785..3671615 (-) 831 WP_289394004.1 spermidine synthase -
  QTN46_RS19920 (QTN46_19920) - 3671815..3673887 (+) 2073 WP_013353958.1 transglycosylase domain-containing protein -
  QTN46_RS19925 (QTN46_19925) - 3673912..3674343 (-) 432 WP_013353959.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=847879 QTN46_RS19905 WP_014471166.1 3669621..3669740(+) (phrF) [Bacillus amyloliquefaciens strain SRCM123386]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=847879 QTN46_RS19905 WP_014471166.1 3669621..3669740(+) (phrF) [Bacillus amyloliquefaciens strain SRCM123386]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462