Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QTN46_RS16405 Genome accession   NZ_CP128501
Coordinates   3010343..3010987 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005343..3015987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS16370 (QTN46_16370) - 3006528..3006959 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  QTN46_RS16375 (QTN46_16375) - 3006959..3007300 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  QTN46_RS16380 (QTN46_16380) - 3007293..3008774 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  QTN46_RS16385 (QTN46_16385) - 3008780..3009256 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  QTN46_RS16390 (QTN46_16390) - 3009256..3009540 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  QTN46_RS16395 (QTN46_16395) mnhG 3009524..3009898 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  QTN46_RS16400 (QTN46_16400) - 3009938..3010321 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  QTN46_RS16405 (QTN46_16405) comA 3010343..3010987 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  QTN46_RS16410 (QTN46_16410) comP 3011068..3013374 (-) 2307 WP_289393861.1 histidine kinase Regulator
  QTN46_RS16415 (QTN46_16415) comX 3013397..3013573 (-) 177 WP_013353396.1 competence pheromone ComX -
  QTN46_RS16420 (QTN46_16420) - 3013592..3014467 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  QTN46_RS16425 (QTN46_16425) degQ 3014619..3014759 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  QTN46_RS16430 (QTN46_16430) - 3015224..3015565 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=847866 QTN46_RS16405 WP_014472195.1 3010343..3010987(-) (comA) [Bacillus amyloliquefaciens strain SRCM123386]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=847866 QTN46_RS16405 WP_014472195.1 3010343..3010987(-) (comA) [Bacillus amyloliquefaciens strain SRCM123386]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86