NTDB

Overview

Name	comGD	Type	Machinery gene
Locus tag	QTN46_RS12710	Genome accession	NZ_CP128501
Coordinates	2355370..2355807 (-)	Length	145 a.a.
NCBI ID	WP_013352869.1	Uniprot ID	A0A9P1JIH3
Organism	Bacillus amyloliquefaciens strain SRCM123386
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2350370..2360807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN46_RS12660 (QTN46_12660)	sinI	2350756..2350929 (+)	174	WP_013352860.1	anti-repressor SinI	Regulator
QTN46_RS12665 (QTN46_12665)	sinR	2350963..2351298 (+)	336	WP_289393728.1	transcriptional regulator SinR	Regulator
QTN46_RS12670 (QTN46_12670)	tasA	2351346..2352131 (-)	786	WP_013352862.1	biofilm matrix protein TasA	-
QTN46_RS12675 (QTN46_12675)	sipW	2352196..2352780 (-)	585	WP_013352863.1	signal peptidase I SipW	-
QTN46_RS12680 (QTN46_12680)	tapA	2352752..2353423 (-)	672	WP_013352864.1	amyloid fiber anchoring/assembly protein TapA	-
QTN46_RS12685 (QTN46_12685)	-	2353681..2354010 (+)	330	WP_013352865.1	DUF3889 domain-containing protein	-
QTN46_RS12690 (QTN46_12690)	-	2354051..2354230 (-)	180	WP_013352866.1	YqzE family protein	-
QTN46_RS12695 (QTN46_12695)	comGG	2354284..2354661 (-)	378	WP_013352867.1	competence type IV pilus minor pilin ComGG	Machinery gene
QTN46_RS12700 (QTN46_12700)	comGF	2354663..2355163 (-)	501	WP_013352868.1	competence type IV pilus minor pilin ComGF	-
QTN46_RS12705 (QTN46_12705)	comGE	2355072..2355386 (-)	315	WP_014470662.1	competence type IV pilus minor pilin ComGE	Machinery gene
QTN46_RS12710 (QTN46_12710)	comGD	2355370..2355807 (-)	438	WP_013352869.1	competence type IV pilus minor pilin ComGD	Machinery gene
QTN46_RS12715 (QTN46_12715)	comGC	2355797..2356063 (-)	267	WP_044051905.1	competence type IV pilus major pilin ComGC	Machinery gene
QTN46_RS12720 (QTN46_12720)	comGB	2356110..2357147 (-)	1038	WP_013352871.1	competence type IV pilus assembly protein ComGB	Machinery gene
QTN46_RS12725 (QTN46_12725)	comGA	2357134..2358204 (-)	1071	WP_013352872.1	competence type IV pilus ATPase ComGA	Machinery gene
QTN46_RS12730 (QTN46_12730)	-	2358398..2359348 (-)	951	WP_013352873.1	magnesium transporter CorA family protein	-
QTN46_RS12735 (QTN46_12735)	-	2359495..2360796 (+)	1302	WP_013352874.1	hemolysin family protein	-

Sequence

Protein

Download Length: 145 a.a. Molecular weight: 16256.71 Da Isoelectric Point: 9.7141

                                >NTDB_id=847850 QTN46_RS12710 WP_013352869.1 2355370..2355807(-) (comGD) [Bacillus amyloliquefaciens strain SRCM123386]

MNNNRLTENGFTLLESLVVLSLASVLLTVLFTAVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK

LQSAGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITIYLGSGNVHAERK

Nucleotide

Download Length: 438 bp

                                >NTDB_id=847850 QTN46_RS12710 WP_013352869.1 2355370..2355807(-) (comGD) [Bacillus amyloliquefaciens strain SRCM123386]

TTGAACAATAACCGGCTGACAGAAAACGGATTCACTCTTCTTGAAAGCCTGGTTGTGTTAAGTCTGGCGTCTGTATTGCT

GACTGTTTTGTTCACGGCGGTTCCGCCGGTTTATACCCATCTGGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGACA

TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACATTTCTCCCAAAAGAGCATAAATACAAG

CTGCAGTCAGCCGGAAGGATTGTTGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA

ATTTAACGAAAAAGGCCATCCGAATTCCGGCGGAAAGATTCAATTGAAAAGCGCGGGATTCACTTATGAAATAACAATTT

ACTTAGGGAGCGGAAATGTCCATGCAGAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.115	95.862	0.538

Detailed information NTG0847850