Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QTN46_RS12485 Genome accession   NZ_CP128501
Coordinates   2319336..2321066 (-) Length   576 a.a.
NCBI ID   WP_289393721.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2314336..2326066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS12460 (QTN46_12460) - 2314713..2314925 (+) 213 WP_014470647.1 spore germination protein -
  QTN46_RS12465 (QTN46_12465) - 2315050..2315262 (+) 213 WP_013352823.1 spore germination protein -
  QTN46_RS12470 (QTN46_12470) alr 2315448..2316630 (+) 1183 Protein_2445 alanine racemase -
  QTN46_RS12475 (QTN46_12475) spo0A 2316821..2317621 (-) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  QTN46_RS12480 (QTN46_12480) spoIVB 2317892..2319172 (-) 1281 WP_045510700.1 SpoIVB peptidase -
  QTN46_RS12485 (QTN46_12485) recN 2319336..2321066 (-) 1731 WP_289393721.1 DNA repair protein RecN Machinery gene
  QTN46_RS12490 (QTN46_12490) argR 2321098..2321547 (-) 450 WP_013352828.1 transcriptional regulator ArgR -
  QTN46_RS12495 (QTN46_12495) - 2321644..2322489 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  QTN46_RS12500 (QTN46_12500) dxs 2322486..2324387 (-) 1902 WP_013352830.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QTN46_RS12505 (QTN46_12505) - 2324530..2325420 (-) 891 WP_013352831.1 polyprenyl synthetase family protein -
  QTN46_RS12510 (QTN46_12510) - 2325410..2325664 (-) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64062.90 Da        Isoelectric Point: 4.7328

>NTDB_id=847845 QTN46_RS12485 WP_289393721.1 2319336..2321066(-) (recN) [Bacillus amyloliquefaciens strain SRCM123386]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSETVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSADEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKSTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=847845 QTN46_RS12485 WP_289393721.1 2319336..2321066(-) (recN) [Bacillus amyloliquefaciens strain SRCM123386]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCTTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAACTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTGGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTTCTTGTG
AAAACCGATCCGTCAGCCGATGAAGCGCCAGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGCATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCTCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
TCCGCAGGTTGCCGCGATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAATCGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.889

100

0.889