Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QTN46_RS12475 Genome accession   NZ_CP128501
Coordinates   2316821..2317621 (-) Length   266 a.a.
NCBI ID   WP_013352825.1    Uniprot ID   A0A9P1JIH1
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2311821..2322621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS12445 (QTN46_12445) - 2312312..2312944 (+) 633 WP_013352819.1 helix-turn-helix domain-containing protein -
  QTN46_RS12450 (QTN46_12450) - 2313237..2313374 (+) 138 WP_014470646.1 hypothetical protein -
  QTN46_RS12455 (QTN46_12455) - 2313468..2314586 (+) 1119 WP_289393718.1 NADH-dependent flavin oxidoreductase -
  QTN46_RS12460 (QTN46_12460) - 2314713..2314925 (+) 213 WP_014470647.1 spore germination protein -
  QTN46_RS12465 (QTN46_12465) - 2315050..2315262 (+) 213 WP_013352823.1 spore germination protein -
  QTN46_RS12470 (QTN46_12470) alr 2315448..2316630 (+) 1183 Protein_2445 alanine racemase -
  QTN46_RS12475 (QTN46_12475) spo0A 2316821..2317621 (-) 801 WP_013352825.1 sporulation transcription factor Spo0A Regulator
  QTN46_RS12480 (QTN46_12480) spoIVB 2317892..2319172 (-) 1281 WP_045510700.1 SpoIVB peptidase -
  QTN46_RS12485 (QTN46_12485) recN 2319336..2321066 (-) 1731 WP_289393721.1 DNA repair protein RecN Machinery gene
  QTN46_RS12490 (QTN46_12490) argR 2321098..2321547 (-) 450 WP_013352828.1 transcriptional regulator ArgR -
  QTN46_RS12495 (QTN46_12495) - 2321644..2322489 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=847844 QTN46_RS12475 WP_013352825.1 2316821..2317621(-) (spo0A) [Bacillus amyloliquefaciens strain SRCM123386]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVLGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=847844 QTN46_RS12475 WP_013352825.1 2316821..2317621(-) (spo0A) [Bacillus amyloliquefaciens strain SRCM123386]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGCTCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCCTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGCAATGTCAGCAGCGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGTCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTTCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCAATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951