Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QTN45_RS18020 Genome accession   NZ_CP128500
Coordinates   3509433..3509831 (+) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504433..3514831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS18000 (QTN45_18000) - 3506841..3507203 (-) 363 WP_013350971.1 helix-turn-helix domain-containing protein -
  QTN45_RS18005 (QTN45_18005) hxlA 3507435..3508070 (+) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  QTN45_RS18010 (QTN45_18010) hxlB 3508067..3508624 (+) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  QTN45_RS18015 (QTN45_18015) nucA/comI 3508975..3509412 (+) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN45_RS18020 (QTN45_18020) nin/comJ 3509433..3509831 (+) 399 WP_013350967.1 competence protein ComJ Regulator
  QTN45_RS18025 (QTN45_18025) - 3509872..3511308 (-) 1437 WP_013350966.1 family 1 glycosylhydrolase -
  QTN45_RS18030 (QTN45_18030) - 3511413..3511736 (-) 324 WP_013350965.1 YckD family protein -
  QTN45_RS18035 (QTN45_18035) - 3511810..3512244 (-) 435 WP_013350964.1 RDD family protein -
  QTN45_RS18040 (QTN45_18040) - 3512259..3513395 (-) 1137 WP_014469722.1 zinc-dependent alcohol dehydrogenase -
  QTN45_RS18045 (QTN45_18045) - 3513459..3514661 (-) 1203 WP_013350962.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=847806 QTN45_RS18020 WP_013350967.1 3509433..3509831(+) (nin/comJ) [Bacillus amyloliquefaciens strain SRCM123364]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=847806 QTN45_RS18020 WP_013350967.1 3509433..3509831(+) (nin/comJ) [Bacillus amyloliquefaciens strain SRCM123364]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765