Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QTN45_RS18015 Genome accession   NZ_CP128500
Coordinates   3508975..3509412 (+) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3503975..3514412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS18000 (QTN45_18000) - 3506841..3507203 (-) 363 WP_013350971.1 helix-turn-helix domain-containing protein -
  QTN45_RS18005 (QTN45_18005) hxlA 3507435..3508070 (+) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  QTN45_RS18010 (QTN45_18010) hxlB 3508067..3508624 (+) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  QTN45_RS18015 (QTN45_18015) nucA/comI 3508975..3509412 (+) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QTN45_RS18020 (QTN45_18020) nin/comJ 3509433..3509831 (+) 399 WP_013350967.1 competence protein ComJ Regulator
  QTN45_RS18025 (QTN45_18025) - 3509872..3511308 (-) 1437 WP_013350966.1 family 1 glycosylhydrolase -
  QTN45_RS18030 (QTN45_18030) - 3511413..3511736 (-) 324 WP_013350965.1 YckD family protein -
  QTN45_RS18035 (QTN45_18035) - 3511810..3512244 (-) 435 WP_013350964.1 RDD family protein -
  QTN45_RS18040 (QTN45_18040) - 3512259..3513395 (-) 1137 WP_014469722.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=847805 QTN45_RS18015 WP_013350968.1 3508975..3509412(+) (nucA/comI) [Bacillus amyloliquefaciens strain SRCM123364]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=847805 QTN45_RS18015 WP_013350968.1 3508975..3509412(+) (nucA/comI) [Bacillus amyloliquefaciens strain SRCM123364]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641