Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V4U93_RS03725 Genome accession   NZ_CP144755
Coordinates   738054..740102 (+) Length   682 a.a.
NCBI ID   WP_061827179.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 733054..745102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS03700 (V4U93_03700) rpe 733258..733920 (+) 663 WP_016264866.1 ribulose-phosphate 3-epimerase -
  V4U93_RS03705 (V4U93_03705) - 733907..734557 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  V4U93_RS03710 (V4U93_03710) rpmB 734906..735091 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  V4U93_RS03715 (V4U93_03715) - 735394..735756 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -
  V4U93_RS03720 (V4U93_03720) - 735820..737490 (+) 1671 WP_025015865.1 DAK2 domain-containing protein -
  V4U93_RS03725 (V4U93_03725) recG/mmsA 738054..740102 (+) 2049 WP_061827179.1 ATP-dependent DNA helicase RecG Machinery gene
  V4U93_RS03730 (V4U93_03730) plsX 740122..741135 (+) 1014 WP_016264871.1 phosphate acyltransferase PlsX -
  V4U93_RS03735 (V4U93_03735) acpP 741282..741524 (+) 243 WP_011374409.1 acyl carrier protein -
  V4U93_RS03740 (V4U93_03740) - 741997..743643 (+) 1647 WP_061827165.1 peptide ABC transporter substrate-binding protein -
  V4U93_RS03745 (V4U93_03745) opp3b 743713..744648 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 76043.51 Da        Isoelectric Point: 6.7874

>NTDB_id=847707 V4U93_RS03725 WP_061827179.1 738054..740102(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKL
IREAFDNYQSVIPDLIPADIRERYKLVSEVELIAEMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLR
EKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLAERFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFA
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=847707 V4U93_RS03725 WP_061827179.1 738054..740102(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTCACCTTAAAAGGAACAGTCGTCGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGACTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAATCAACCCTACTTGAAGGATAAATT
TGAAGCCGGTGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACGCTCGTGAAACTG
ATTCGCGAAGCATTTGATAATTATCAAAGTGTCATTCCGGATTTGATTCCGGCCGACATTCGCGAGCGGTATAAATTAGT
TTCTGAAGTGGAACTGATTGCCGAAATGCATTTTCCAGAAAGCTACCCAGAAGCCAAGCAGGCGCGACGCACCGCCATTT
TTCATGAATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACGTTACCGTTTGATTTAACGGATGCCCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAATCGCCTTTTACAAGGGGATGTTGGGTCTGGGAAAACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAA
GGAGCGCCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGCACGCACGCACTTATTCAAGATG
CCGTGGTTTACCATAAGTTAGGCTTTGCCGTCATTGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGT
GAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGAGGACCTTGGCAATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTAGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATATACGCAACTTTGGCGGAGCGGTTTGAGCCGCAGTACCATGTGGCGCT
ATTACACGGTAAGCTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAACAACGAGATTCAACTACTGGTTT
CAACGACCGTTGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTTGATGCTGACCGATTTGGGTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCTGATCCTAAGAA
CCAACAAGGTGTTGATCGAATGACGATTATGACTGAAACGACCAACGGCTTTGTCGTCGCGCAAAAGGATTTAGAGTTGC
GAGGTCCCGGTGAGGTCTTTGGTGATCGCCAATCAGGATTACCAGTTTTCAAGGTTGGTGATCCAGTCGCTGATTTTGCC
AGTTTACAGGTCGCACAGCAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

RecG wedge domain (RecG_wedge)

(14-164)

DEAD/DEAH box helicase (DEAD)

(259-416)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

98.827

0.507
  recG/mmsA Streptococcus pneumoniae R36A

51.335

98.827

0.507
  recG Bacillus subtilis subsp. subtilis str. 168

49.17

97.214

0.478