Detailed information NTG0847595

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: V4941_RS03130
• Genome accession: NZ_CP144736
• Coordinates: 770007..771287 (-)
• Length: 426 a.a.
• NCBI ID: WP_012700944.1
• Uniprot ID: C1DHF1
• Organism: Azotobacter vinelandii DJ
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 765007..776287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4941_RS03120 (V4941_03115)	hupB	767076..767348 (-)	273	WP_012700946.1	nucleoid-associated protein HU-beta	-
V4941_RS03125 (V4941_03120)	lon	767484..769880 (-)	2397	WP_085930850.1	endopeptidase La	-
V4941_RS03130 (V4941_03125)	clpX	770007..771287 (-)	1281	WP_012700944.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
V4941_RS03135 (V4941_03130)	clpP	771390..772010 (-)	621	WP_041807539.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
V4941_RS03140 (V4941_03135)	tig	772115..773425 (-)	1311	WP_012700941.1	trigger factor	-
V4941_RS03160 (V4941_03155)	folD	774157..775011 (+)	855	WP_012700940.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46554.30 Da
• Isoelectric Point: 4.8143

>NTDB_id=847595 V4941_RS03130 WP_012700944.1 770007..771287(-) (clpX) [Azotobacter vinelandii DJ]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPAPKEISTILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSPDVGKKIGEALRDVEPDDLVKFGLIPEFVGRLPVIATLDELDEA
ALVQILTEPKNALTKQYGKLFEMEGVELEFRPDALRAVALRALERKTGARGLRSILEGVLLDTMYEIPSQSGVSKVVIDE
SVIAGASKPLLIYENVEPPAKAAPDA

Nucleotide

• Length: 1281 bp

>NTDB_id=847595 V4941_RS03130 WP_012700944.1 770007..771287(-) (clpX) [Azotobacter vinelandii DJ]
ATGACTGACACCCGTAACGGCGAGGACAATGGCAAACTGCTTTACTGCTCCTTCTGCGGCAAGAGCCAGCATGAGGTACG
CAAGCTGATTGCCGGCCCCTCGGTCTTTATTTGTGACGAGTGCGTCGACCTGTGCAACGACATTATCCGAGAGGAAGTGC
AAGAAGCTCAGGCCGAAAGCAGTGCGCATAAGCTACCCGCACCCAAGGAAATCAGTACCATTCTTGACCAGTATGTCATT
GGTCAGGAGCGTGCCAAGAAGGTCTTGGCTGTGGCGGTGTACAACCACTACAAGCGCCTGAACCAGCGTGACAAGAAGGA
TGATGTCGAGCTGGGCAAGAGCAATATCCTGTTGATCGGCCCAACTGGCTCGGGCAAGACTTTGCTGGCTGAAACCTTGG
CCCGTCTATTGAATGTTCCTTTTACCATCGCCGACGCGACTACTCTGACCGAGGCAGGTTATGTTGGCGAGGATGTCGAG
AACATCATTCAGAAGCTATTGCAGAAATGCGACTATGATGTCGAGAAAGCCCAGATGGGTATCGTCTACATTGACGAAAT
CGACAAGATTTCGCGCAAATCCGATAATCCGTCGATTACGCGGGATGTATCGGGCGAGGGCGTCCAGCAAGCTCTGCTCA
AGCTGATCGAGGGAACGGTAGCTTCCGTTCCGCCGCAGGGTGGGCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGAT
ACTCGCAACATTCTCTTTATTTGTGGCGGCGCCTTTTCCGGTTTGGAAAAGGTGATCCAGAACCGCTCGACGAAGGGGGG
GATCGGCTTCAATGCCGAGGTACGAAGCCCGGATGTTGGCAAGAAAATCGGCGAGGCTCTACGCGATGTGGAGCCGGATG
ATCTGGTCAAGTTCGGTCTGATACCGGAGTTCGTAGGGCGTTTACCCGTCATCGCCACGCTTGACGAGTTGGATGAGGCG
GCCTTGGTGCAGATCCTCACGGAGCCCAAGAATGCCTTGACCAAGCAGTACGGCAAGCTGTTCGAGATGGAAGGGGTGGA
GCTTGAATTCCGTCCCGATGCATTGCGAGCCGTGGCCTTGCGCGCACTTGAGCGAAAGACCGGGGCGCGTGGATTGCGCT
CCATTCTCGAGGGTGTTCTGCTGGATACCATGTATGAGATTCCCTCGCAATCTGGTGTCAGCAAGGTGGTTATCGATGAG
AGTGTCATCGCTGGTGCTTCCAAGCCCCTACTGATCTATGAAAACGTGGAGCCGCCTGCCAAGGCCGCACCTGATGCTTG
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-393)

3D structure

• AlphaFold DB: C1DHF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.139	94.836	0.58
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.683	94.836	0.538