Detailed information NTG0847590

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V4941_RS00935
• Genome accession: NZ_CP144736
• Coordinates: 217077..219347 (+)
• Length: 756 a.a.
• NCBI ID: WP_338468772.1
• Uniprot ID: -
• Organism: Azotobacter vinelandii DJ
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 212077..224347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4941_RS00910 (V4941_00910)	-	212519..212752 (-)	234	WP_041807230.1	hypothetical protein	-
V4941_RS00915 (V4941_00915)	-	212789..212953 (-)	165	WP_012701392.1	hypothetical protein	-
V4941_RS00920 (V4941_00920)	-	213383..215608 (-)	2226	WP_012701390.1	NADP-dependent isocitrate dehydrogenase	-
V4941_RS00925 (V4941_00925)	cspD	216177..216455 (-)	279	WP_012701388.1	cold shock domain-containing protein CspD	-
V4941_RS00930 (V4941_00930)	clpS	216685..217047 (+)	363	WP_012701387.1	ATP-dependent Clp protease adapter ClpS	-
V4941_RS00935 (V4941_00935)	clpC	217077..219347 (+)	2271	WP_338468772.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
V4941_RS00940 (V4941_00940)	infA	219428..219646 (-)	219	WP_002553999.1	translation initiation factor IF-1	-
V4941_RS00945 (V4941_00945)	-	219749..220456 (-)	708	WP_041807228.1	arginyltransferase	-
V4941_RS00950 (V4941_00950)	aat	220536..221216 (-)	681	WP_012701384.1	leucyl/phenylalanyl-tRNA--protein transferase	-
V4941_RS00955 (V4941_00955)	trxB	221268..222215 (-)	948	WP_012701383.1	thioredoxin-disulfide reductase	-

Sequence

Protein

• Length: 756 a.a.
• Molecular weight: 83688.33 Da
• Isoelectric Point: 6.0466

>NTDB_id=847590 V4941_RS00935 WP_338468772.1 217077..219347(+) (clpC) [Azotobacter vinelandii DJ]
MLNRELEVTLNLAFKEARAKRHEFMTVEHLLLALLDNEAAAAVLRACGANIDKLRHDLQEFIDSTTPLIPQHDEERETQP
TLGFQRVLQRAVFHVQSSGKREVTGANVLVAIFSEQESQAVFLLKQQSVARIDVVNYIAHGISKVPGHGDHPDGEHEMQD
EEGGDASASGHPLEAYASNLNELARQGRIDPLVGREFEVERVAQILARRRKNNPLLVGEAGVGKTAIAEGLAKRIVDNQV
PDLLTHSVVYSLDLGALLAGTKYRGDFEKRFKALLNELRKKPHAILFIDEIHTIIGAGAASGGVMDASNLLKPLLSSGEI
RCIGSTTFQEFRGIFEKDRALARRFQKVDVIEPSVEDTVGILRGLKPRFEQHHGIEYSDEALRAAAELSFRYINDRHMPD
KAIDVIDEAGAFQRLQPEDRRAKLIDVAQVEDIVAKIARIPPKHVSTSDKELLRNLERDLKLTVFGQDAAIDSLATAIKL
SRAGLKSPDKPVGSFLFAGPTGVGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQ
PHCVLLLDEIEKAHPEVFNLLLQVMDHGTLTDNNGRKADFRSVIIIMTTNAGAETAARASIGFTLQDHSSDAMEVIKKSF
TPEFRNRLDTIIQFGRLSHEVIKNIVDKFLTELQAQLEDKHVQLDVSERARGWLAEHGYDAQMGARPMARLIQDRIKRPL
AKEILFGELAEHGGVVHIDLEGEELSFDFETAAEVA

Nucleotide

• Length: 2271 bp

>NTDB_id=847590 V4941_RS00935 WP_338468772.1 217077..219347(+) (clpC) [Azotobacter vinelandii DJ]
ATGTTGAACCGTGAGCTCGAAGTCACTCTCAATCTTGCCTTCAAGGAGGCTCGTGCAAAACGTCATGAGTTCATGACGGT
GGAGCACCTCCTGCTGGCGCTTCTGGACAACGAAGCCGCGGCTGCCGTACTGCGGGCCTGCGGTGCGAATATCGACAAGC
TCCGGCATGACTTGCAGGAGTTCATCGACTCCACGACTCCTCTGATTCCACAGCACGATGAAGAGCGTGAGACCCAGCCT
ACCCTCGGCTTCCAGAGGGTGCTGCAGCGCGCGGTCTTTCATGTGCAGAGTTCTGGTAAGCGGGAAGTGACCGGAGCCAA
CGTGCTCGTGGCCATCTTCAGCGAACAGGAAAGCCAGGCCGTCTTTCTGCTCAAGCAGCAGAGTGTGGCTCGTATAGACG
TGGTGAACTACATTGCTCATGGCATTTCCAAAGTGCCGGGTCATGGCGATCATCCTGATGGCGAGCATGAGATGCAGGAC
GAAGAGGGTGGAGACGCTTCGGCTTCCGGTCATCCCCTGGAGGCCTATGCGAGCAATCTGAACGAACTGGCTCGTCAGGG
GCGGATCGATCCGCTGGTCGGGCGTGAGTTCGAGGTCGAGCGGGTCGCGCAGATCCTGGCCCGGCGGCGCAAGAACAATC
CTCTGCTGGTGGGCGAGGCCGGGGTCGGCAAAACGGCCATCGCCGAAGGATTGGCGAAACGCATCGTCGACAATCAGGTT
CCGGATCTTCTGACGCACAGCGTCGTGTACTCCCTCGACCTCGGGGCATTGCTCGCCGGTACCAAATATCGCGGTGACTT
CGAGAAGCGCTTCAAGGCATTGCTCAATGAGTTGCGCAAGAAGCCGCATGCCATCCTGTTCATCGACGAGATCCACACCA
TCATAGGCGCCGGTGCCGCCTCCGGCGGTGTGATGGATGCCTCGAACCTGCTCAAGCCGCTTCTCTCGTCCGGAGAGATC
CGCTGCATCGGTTCGACCACCTTCCAGGAGTTCCGCGGCATCTTCGAGAAGGATCGGGCCTTGGCGCGTCGTTTCCAGAA
GGTCGATGTGATCGAGCCTTCGGTCGAGGATACCGTGGGTATCCTTCGCGGGCTCAAGCCGCGTTTCGAGCAGCACCATG
GCATCGAGTACAGCGATGAGGCGCTGCGGGCCGCAGCGGAGCTGTCCTTTCGCTATATCAACGATCGCCACATGCCTGAC
AAAGCCATCGATGTTATCGACGAGGCAGGTGCCTTCCAGCGTCTCCAGCCGGAGGACCGGCGTGCCAAGCTTATCGATGT
GGCTCAGGTCGAGGATATCGTTGCCAAGATCGCTCGTATTCCGCCCAAACATGTTTCCACTTCCGACAAGGAACTGCTGC
GTAATCTCGAGCGCGATCTCAAGTTGACCGTATTCGGTCAGGATGCCGCTATCGATTCGCTCGCCACGGCAATCAAGTTG
TCGCGGGCTGGCTTGAAGTCACCGGACAAGCCGGTCGGTTCCTTCCTCTTCGCCGGTCCCACCGGGGTGGGCAAGACCGA
GGCGGCCCGGCAGTTGGCCAAGGCGCTGGGTGTGGAGCTGGTGCGTTTCGACATGTCCGAGTACATGGAGCGGCACACGG
TTTCGCGGCTGATCGGCGCGCCTCCGGGATACGTCGGGTTCGATCAGGGGGGGCTGCTGACCGAGGCGATTACCAAGCAG
CCGCATTGCGTGCTGTTGCTGGATGAAATCGAGAAGGCGCACCCCGAGGTGTTCAATCTGCTATTGCAGGTCATGGACCA
TGGCACGCTGACCGACAACAACGGGCGCAAGGCTGATTTCCGCAGTGTCATCATCATCATGACCACCAATGCCGGGGCGG
AAACCGCGGCCCGTGCCTCGATCGGCTTTACTCTGCAGGATCATTCTTCCGATGCTATGGAGGTGATCAAGAAGAGCTTC
ACTCCCGAGTTCCGCAACCGTTTGGATACCATTATCCAGTTCGGTCGCCTGAGTCACGAGGTGATCAAGAATATCGTCGA
CAAGTTCCTTACCGAACTTCAGGCGCAACTGGAAGACAAGCACGTACAGCTGGATGTTTCCGAGCGGGCTCGTGGTTGGC
TCGCCGAGCATGGATATGATGCTCAGATGGGCGCGCGGCCGATGGCTCGCCTGATTCAGGACAGGATCAAGCGTCCCCTG
GCCAAGGAAATTCTCTTCGGTGAGTTGGCCGAGCATGGGGGAGTGGTGCATATCGATCTGGAGGGTGAGGAGCTTTCCTT
CGACTTCGAGACGGCAGCCGAAGTGGCTTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (215-328)

• AAA lid domain (AAA_lid_9) (354-457)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

• AAA domain (Cdc48 subfamily) (AAA_2) (490-651)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (657-737)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.412	100	0.426
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.724	96.693	0.403
clpC	Streptococcus pneumoniae Rx1	38.287	100	0.402
clpC	Streptococcus pneumoniae TIGR4	38.287	100	0.402
clpC	Streptococcus pneumoniae D39	38.287	100	0.402
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.121	100	0.389
clpC	Streptococcus mutans UA159	45.177	82.275	0.372
clpC	Lactococcus lactis subsp. cremoris KW2	45.274	79.762	0.361