Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QSV55_RS06420 Genome accession   NZ_CP128470
Coordinates   1179774..1180103 (-) Length   109 a.a.
NCBI ID   WP_243721436.1    Uniprot ID   -
Organism   Macrococcus bovicus strain LI0213     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174774..1185103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV55_RS06385 (QSV55_06400) gcvPA 1175574..1176917 (-) 1344 WP_289649550.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QSV55_RS06390 (QSV55_06405) gcvT 1176929..1178011 (-) 1083 WP_133450733.1 glycine cleavage system aminomethyltransferase GcvT -
  QSV55_RS06395 (QSV55_06410) - 1178084..1178581 (-) 498 WP_289649551.1 shikimate kinase -
  QSV55_RS06400 (QSV55_06415) - 1178582..1178758 (-) 177 WP_165983670.1 hypothetical protein -
  QSV55_RS06405 (QSV55_06420) - 1178736..1179194 (-) 459 WP_289649552.1 competence type IV pilus minor pilin ComGF -
  QSV55_RS06410 (QSV55_06425) - 1179142..1179375 (-) 234 WP_133450736.1 type II secretion system protein -
  QSV55_RS06415 (QSV55_06430) - 1179362..1179787 (-) 426 WP_165983671.1 hypothetical protein -
  QSV55_RS06420 (QSV55_06435) comGC 1179774..1180103 (-) 330 WP_243721436.1 competence type IV pilus major pilin ComGC Machinery gene
  QSV55_RS06425 (QSV55_06440) comGB 1180132..1181166 (-) 1035 WP_289649553.1 competence type IV pilus assembly protein ComGB -
  QSV55_RS06430 (QSV55_06445) comGA 1181135..1182127 (-) 993 WP_133450740.1 competence type IV pilus ATPase ComGA -
  QSV55_RS06435 (QSV55_06450) - 1182328..1182576 (+) 249 WP_133432009.1 DUF2626 domain-containing protein -
  QSV55_RS06440 (QSV55_06455) - 1182610..1183227 (-) 618 WP_289649554.1 MBL fold metallo-hydrolase -
  QSV55_RS06445 (QSV55_06460) - 1183321..1183560 (+) 240 WP_133450742.1 DUF2759 domain-containing protein -
  QSV55_RS06450 (QSV55_06465) - 1183586..1183897 (-) 312 WP_289649555.1 MTH1187 family thiamine-binding protein -
  QSV55_RS06455 (QSV55_06470) - 1183908..1184867 (-) 960 WP_289649556.1 ROK family glucokinase -
  QSV55_RS06460 (QSV55_06475) - 1184864..1185055 (-) 192 WP_133432014.1 YqgQ family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11970.07 Da        Isoelectric Point: 8.5110

>NTDB_id=847567 QSV55_RS06420 WP_243721436.1 1179774..1180103(-) (comGC) [Macrococcus bovicus strain LI0213]
MKVKEMIKRSFRTDEGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQSTGCTAQVKMVQGQMEAYKLQTGKTPTSVQDL
VPDFLKENQTQCKNGKAINIVNGEAVASS

Nucleotide


Download         Length: 330 bp        

>NTDB_id=847567 QSV55_RS06420 WP_243721436.1 1179774..1180103(-) (comGC) [Macrococcus bovicus strain LI0213]
CTGAAAGTTAAGGAAATGATCAAACGGAGTTTTCGTACGGATGAAGGTTTCACACTTATAGAGATGCTGTTAGTTCTATT
AGTCATTTCAGTTCTCATCATCGTCATTATCCCGAACATCGCTAAACAATCTGATAATGTCCAGTCCACTGGCTGTACAG
CTCAGGTTAAAATGGTGCAAGGACAGATGGAAGCGTATAAACTGCAGACCGGAAAAACACCTACGAGCGTTCAGGATCTG
GTGCCTGATTTCCTGAAGGAAAACCAGACGCAATGTAAGAATGGCAAGGCGATTAACATTGTAAACGGTGAAGCGGTTGC
ATCCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(15-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

59.596

90.826

0.541
  comGC Staphylococcus aureus N315

59.596

90.826

0.541